Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01427 ATGGCTTCTAAGACCCCTGTCCCTCTTGAAGCCATCAACACAAAGCTACCATCTTTGAGAGCAAAGAAGGACCGCCACACTAAGGTGAATGGGAGAGAACGACGTGTTCTTTTGCCACCTTTGTGCGCTGCTCGCATCTTCCAACTCACTCGTGAGTTAGGCTACAAGACTCATGGGGAGACCATAGGGTGGCTTCTACGCCAGGCTGAACCCTCCATTATCGCTGCCACTGGCACTGGGGTGTCACCTTCCATGGTTGCATCTGCATCTGCATCGGCATCAACACCATCACTATCTGAGGACAAAAACATTGTTGGTTTACATGCAAATTCAGTGGTTGCATCAACAAACAATGAGATCGTGTCAAAACAGGCATTTCTACCATTGGATTCTGATTTGCTAGCAAACTTTAATGTGGAGTTTTCTGCTAATGAGATGACAATGTTGCAATCATTGATGACAAGATTGGGTTGA 474 0.4641 MASKTPVPLEAINTKLPSLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIIAATGTGVSPSMVASASASASTPSLSEDKNIVGLHANSVVASTNNEIVSKQAFLPLDSDLLANFNVEFSANEMTMLQSLMTRLG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01427 157 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Pumo11g01427 157 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 114 IPR005333 GO:0003700
Pumo11g01427 157 Pfam TCP family transcription factor 21 100 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01427 Pumo-Chr11 44617379 44617852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01427 8 96 TCP Transcription Factor Family AT5G08330 62.921 3.03e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo11g01427 TCP 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01427 - K16221 var:108322003 211.846