Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01400 ATGCTCGCATTGCAATTCCGCCCCTGCTTCTCTCCTCCTCTCTATCGCTCCATAGTTAGGGTTTCATCTCTCTTCTCTTTCCCTCTCTCCTTCACCCCTCTCCGCGCAATGTCGAAGAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAGAAATCCCAACCATCACCCTCATCCCCCAAGAAAAGAAAAACCCCACCCACGCAAAACCCTAGCAACCTCAAACCCCCTTCCCCACGCAAAGCCGCTAAACAGCAAGAATCCGTTAAACCGGAAGAACCCGCCGTTAAGACGGAACCGCGGAAGGTCCGCCACGTGTCATCTTCTTCTTCTTCTTCTTCTTCGCAGGAGAAGACCGCGGAGCTCAAGAAGCGAGTTCCGCAGCTGAAGAAGAAACCCTCGGATTTCGATCCCGCTTCGGTGACCACATGGGAGAAGGGCCAGCCCGTGCCGTTCCTCTTTCTCTGCTTGGCCTTCGACATGATTTCTCAAGAATCCGGAAGAATCGTCATCACTGACATTGTCTGCAATCTGCTGAGGACTGTGATGCACGCCACGCCGGAGGATCTTGTTCCGGTGGTGTACCTCTCCGCGAACCAGATTGCTCCGGCGCACGCAGGGTTGGAATTGGGACTTGGTGAAGCTTCCATCACCAAGGCGCTCGCTGAGGCCTATGGAAGGACTGAGGCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCTTCGCAGTCTATGATGTGGAAACCTGATGCATTGACTATTAGGAAGGTTTTCAACACTTTTCACCTTATTGCTAAGGAATCTGGAAAAGAAAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTCGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGCTTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTTGATGATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTTTGAAAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGATGCTTCCAAAGAATTGTAATTTTACCCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAACAAAGGGTATATCTGAAGTTCTAAATAAATTCCAGGATGTTGAGTTTACCTGTGAATACAAATACGACGGAGAGCGTGCCCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGACATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTTATTCTTGATTGTGAAATTGTTGCATATGATCGTGAAAAACAGAATATCCGTTCTTTCCAGGTGCTTAGTACTCGGGCTCGCAAGAATGTAAAAATAGAAGATATAACGGTTGATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCCGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAAGTTTTTCTTGACCAAGCTGTTGGTGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGAAACTATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCACTGAAGCAGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATTTGGAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCCGACCTGACCATTAGTCCTGTTCACCGTGCTGCAGTGGGCATAGTAGATCCATCCAAGGGCATATCTCTTCGATTTCCACGACTAGTTCGAGTCCGGCCTGACAAAGCTCCTGAACAGGCCTCATCATCTGAGCAGGTGGCTGAAATGTATAACGCTCAAAAAAACAATCACACGAACAACCAAGATGATGATGATGAAGATGATGATTGA 2331 0.4577 MLALQFRPCFSPPLYRSIVRVSSLFSFPLSFTPLRAMSKKPPSAFDALMSGARAAAAAKKKSQPSPSSPKKRKTPPTQNPSNLKPPSPRKAAKQQESVKPEEPAVKTEPRKVRHVSSSSSSSSSQEKTAELKKRVPQLKKKPSDFDPASVTTWEKGQPVPFLFLCLAFDMISQESGRIVITDIVCNLLRTVMHATPEDLVPVVYLSANQIAPAHAGLELGLGEASITKALAEAYGRTEAWIKTQYQKKGDLGLVAKESRSSQSMMWKPDALTIRKVFNTFHLIAKESGKESQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLAALGQAAVYTEEHSKPPPDIQSPLEEALMIVKQVYSVLPDFEKIISALLTEGLWMLPKNCNFTPGVPIRPMLSKATKGISEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRHAERNTGKFPDVVAAVSRLKKPTVSSFILDCEIVAYDREKQNIRSFQVLSTRARKNVKIEDITVDVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQVFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMETIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFTEAVLEERSSSLRSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDPSKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKNNHTNNQDDDDEDDD 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01400 776 ProSitePatterns ATP-dependent DNA ligase signature 2. 580 606 IPR016059 GO:0003909
Pumo11g01400 776 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 142 393 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo11g01400 776 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 394 612 - -
Pumo11g01400 776 Gene3D DNA ligase/mRNA capping enzyme 431 556 - -
Pumo11g01400 776 ProSiteProfiles ATP-dependent DNA ligase family profile. 508 644 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo11g01400 776 FunFam DNA ligase 611 770 - -
Pumo11g01400 776 Gene3D - 134 404 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo11g01400 776 MobiDBLite consensus disorder prediction 94 113 - -
Pumo11g01400 776 FunFam DNA ligase 431 556 - -
Pumo11g01400 776 CDD Adenylation_DNA_ligase_I_Euk 391 609 - -
Pumo11g01400 776 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 426 434 IPR016059 GO:0003909
Pumo11g01400 776 Gene3D - 611 774 IPR012340 -
Pumo11g01400 776 Gene3D - 412 610 - -
Pumo11g01400 776 SUPERFAMILY Nucleic acid-binding proteins 614 760 IPR012340 -
Pumo11g01400 776 MobiDBLite consensus disorder prediction 54 151 - -
Pumo11g01400 776 CDD OBF_DNA_ligase_I 614 759 - -
Pumo11g01400 776 Pfam DNA ligase N terminus 160 335 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo11g01400 776 MobiDBLite consensus disorder prediction 745 764 - -
Pumo11g01400 776 MobiDBLite consensus disorder prediction 69 83 - -
Pumo11g01400 776 Pfam ATP dependent DNA ligase domain 402 606 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo11g01400 776 NCBIfam ATP-dependent DNA ligase 218 757 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pumo11g01400 776 Pfam ATP dependent DNA ligase C terminal region 631 742 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pumo11g01400 776 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 58 774 - -
Pumo11g01400 776 MobiDBLite consensus disorder prediction 740 776 - -
Pumo11g01400 776 MobiDBLite consensus disorder prediction 127 141 - -
Pumo11g01400 776 FunFam DNA ligase 137 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01400 Pumo-Chr11 44223214 44232111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01400 22 774 Core DNA Replication Machinery Family AT1G08130 66.102 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01400 K10747 - gmx:100783155 1289.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01400 11 44223214 44232111 Pumo11g01400 11 44223214 44232111 ECH