Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01397 ATGAAAACCACGGCACAGTTTGTTTCATCTCATTGTCTTGTTGTAGCAGAGTACTCTGAATACAGCCCCACACAACTCTCTGCTATGGAACCTGAGATTCAGAATTTTGGGTGCATGCATTACAGAAGGAGATGTAAGATCAGAGCGCCCTGTTGTGATGAGGTTTTTAACTGTAGGCATTGCCATAATGAAGCTAAGAACTCCGAGGAGGTTGATGCTGTGGATAGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGCTCCTTATGTGATACAGAGCAAGATGTTCAACATCACTGTATAAACTGTGGAATATGCATGGGTAAATACTTTTGTGCTATATGCAAATTCTTTGATGATGATATTTCAAAGAACCAATACCACTGTGATGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAAATGTGGATGTTGCTACTCGAAGATAATGGAAAAGGGGCATCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTGTTTGATACAGTAAGAGAAATCAGTGTCTTACCTTGTGCACATACTATACATTTAGACTGTGTTAAAGAGATGGAAAAACATCAGAGGTACTCATGTCCCGTTTGCTCAAAATCCATCTGTGACATGTCAAGTGTGTGGAAGAAGCTTGACGAATTGGTTGCCTCAACTCCAATGCCTGAAACCTACAAAAACAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTAAACTCTCATGTACAATTCCATATTGTGGCCCATAAGTGCTTAAGTTGCAACTCATACAACACAAGACAGATACAGGGAGTACCTGCTACATCAAGCTCATCTAGGGTGACTGAAATGGTGAGATGA 897 0.408 MKTTAQFVSSHCLVVAEYSEYSPTQLSAMEPEIQNFGCMHYRRRCKIRAPCCDEVFNCRHCHNEAKNSEEVDAVDSHDVPRHEIKKVICSLCDTEQDVQHHCINCGICMGKYFCAICKFFDDDISKNQYHCDECGICRTGGKDNFFHCKKCGCCYSKIMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHQRYSCPVCSKSICDMSSVWKKLDELVASTPMPETYKNKMVWILCNDCGVNSHVQFHIVAHKCLSCNSYNTRQIQGVPATSSSSRVTEMVR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01397 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Pumo11g01397 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Pumo11g01397 298 SMART ring_2 174 216 IPR001841 -
Pumo11g01397 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Pumo11g01397 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 236 IPR013083 -
Pumo11g01397 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Pumo11g01397 298 FunFam RING finger and CHY zinc finger domain-containing protein 1 245 289 - -
Pumo11g01397 298 Pfam RING-type zinc-finger 174 214 IPR027370 -
Pumo11g01397 298 Gene3D - 245 286 - -
Pumo11g01397 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Pumo11g01397 298 SUPERFAMILY CHY zinc finger-like 35 108 IPR037274 GO:0008270
Pumo11g01397 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 29 282 - -
Pumo11g01397 298 SUPERFAMILY RING/U-box 172 222 - -
Pumo11g01397 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01397 Pumo-Chr11 44201729 44205597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01397 27 291 C2H2 Transcription Factor Family AT3G18290 40.876 1.72e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01397 K10144 - gmx:100812709 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01397 11 44201729 44205597 Pumo11g01397 11 44201729 44205597 ECH