Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01396 ATGGACACAAAGGATTTTCATCAAGAGACTCTATTGCACATTAATGACTTTGAGGTGCACGACTTTGTCGAAGATCCCAACTTAGATCAGTTCATCAATTTGATTCGTTGGGAGAATAAAGATGCTATCTGTAACTTCAATTCTGAGCCTATCAATGAAGCATTCATTGATAACTCATTCTTGTCACACCCTGCAATCCCATTTGATCAGTGCAATAGTAATTCTGTTAATGTTTATGATCCAAACTCTACACATGGCTCCTTCTCTTGTTTTGATGGGGAAGCCAAGGAAGGAGGAGGAGGAGAAGAAGATAACATGGGGGATTCTTCTGCTACAACTACCACCACAACAACAACAACTAAGAGTGATAATGCTAAGCCAAGACCAAAAACTGATAGGTCCAAGACTTTGATTTCTGAGAGGAGGAGAAGAGACCGAATGAAGGAGAAGCTTTATACATTGCGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATATGCATGAGCTTCAAGCACAAGCCAACATGTTGAAGGCTGAGGTTGAAGGACTTGAAACATCCTTATTGGAGTCCAAACATTATCAAGGATCAATTGAAAACACCATGAAGGTTCAATTGACCAACAACAGCAGTTCAATCTGCAAGAAGATAATCCAGATGGACATGTTTCAAGTGAATGAGAAAGAGTTTTATGTGAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCATTATACAAGTCTCTCGAGTCTCTAACAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGTTTTCTACTTACATTTTCATTGAATGCGAAAGGCTCTGAGCCAGAAAGTTAA 888 0.3975 MDTKDFHQETLLHINDFEVHDFVEDPNLDQFINLIRWENKDAICNFNSEPINEAFIDNSFLSHPAIPFDQCNSNSVNVYDPNSTHGSFSCFDGEAKEGGGGEEDNMGDSSATTTTTTTTTKSDNAKPRPKTDRSKTLISERRRRDRMKEKLYTLRSLVPNITKMDKASIIGDAVSYMHELQAQANMLKAEVEGLETSLLESKHYQGSIENTMKVQLTNNSSSICKKIIQMDMFQVNEKEFYVKIVCNKGEGVAASLYKSLESLTGFNVQNSNLATVSDSFLLTFSLNAKGSEPES 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01396 295 SMART finulus 137 186 IPR011598 GO:0046983
Pumo11g01396 295 MobiDBLite consensus disorder prediction 106 124 - -
Pumo11g01396 295 MobiDBLite consensus disorder prediction 90 145 - -
Pumo11g01396 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Pumo11g01396 295 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 197 - -
Pumo11g01396 295 MobiDBLite consensus disorder prediction 125 145 - -
Pumo11g01396 295 Coils Coil 177 197 - -
Pumo11g01396 295 Gene3D - 121 197 IPR036638 GO:0046983
Pumo11g01396 295 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 50 286 - -
Pumo11g01396 295 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Pumo11g01396 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01396 Pumo-Chr11 44195137 44196359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01396 10 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.027 3.37e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g01396 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01396 K26214 - gmx:100778649 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03828 4 78502119 78503522 Pumo11g01396 11 44195137 44196359 PCT