Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01394 ATGGCGAATTGCTTGATTCTCTTGGCCCAGGGAGGGGAATCTCATCACGACAAGCAACAAGTTGAAGATCATGGTCTTGAAAATTGTGATGGTGTCAAGACAGAAAAGGGTAACAGCAACAATAGCACCGCAACAACAACAACAGCTGTTAATAACACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAGAAACCCAAACTCGTGGCTGAAGAGAAAAAACAACCACAACCACCGTCACCGCTACCGTCTCAATTGTCACACATGGTTATTACCAATTATGATCGGTTTGAGAAGGGTAACGTTAAAAGTGGTCCTCCTCCAATTTCCCTTCAATTGAGTCATGGCAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGTTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACACCAATACTGTTGACACAACAAGTTGTAACACCATGACCGCCACCATCACCGCTGCTCAGCCGAGGAATATCTTGCAATTGGATCTTAACCTCCCGGCGCCGGAGGATGATCTCCGGGAGGCTAAGTTCCAATTTACAACAACTCAGGTGCTGATTGGTACTCCGGCTTTGGTGGATTGTCATTATTAG 696 0.4598 MANCLILLAQGGESHHDKQQVEDHGLENCDGVKTEKGNSNNSTATTTTAVNNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLVAEEKKQPQPPSPLPSQLSHMVITNYDRFEKGNVKSGPPPISLQLSHGNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNTNTVDTTSCNTMTATITAAQPRNILQLDLNLPAPEDDLREAKFQFTTTQVLIGTPALVDCHY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01394 231 MobiDBLite consensus disorder prediction 76 105 - -
Pumo11g01394 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Pumo11g01394 231 PANTHER ZINC FINGER PROTEIN ZAT5 1 214 - -
Pumo11g01394 231 SMART c2h2final6 60 82 IPR013087 -
Pumo11g01394 231 SMART c2h2final6 142 164 IPR013087 -
Pumo11g01394 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Pumo11g01394 231 Pfam C2H2-type zinc finger 142 166 - -
Pumo11g01394 231 Pfam C2H2-type zinc finger 60 85 - -
Pumo11g01394 231 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Pumo11g01394 231 Gene3D Classic Zinc Finger 128 190 - -
Pumo11g01394 231 Gene3D Classic Zinc Finger 35 105 - -
Pumo11g01394 231 SUPERFAMILY beta-beta-alpha zinc fingers 59 164 IPR036236 -
Pumo11g01394 231 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01394 Pumo-Chr11 44173351 44174691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01394 1 231 C2H2 Transcription Factor Family AT2G28200 46.341 5.08e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01394 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01394 - - gmx:100782408 354.755