Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01392 ATGATGCCAAAAGCCACATCTACCTCCACAAATGATTTTCAAGAACTGCACATGTTTCCTCCTGTGAATGAATATTTGGTTTCACCTAATTCTGTTGAAGCAAGCTCTTCCTCAGCTTCACACTCTTCCAACTCTCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTAAGTCAACTGCAGAACCTAGTTGGTGTTCTTGTCTCCCCTCAACAGAACCTACCTGAGTCAACTCCCATGGCCATCTCCACCATGAACAACACAATCCAAGAAATCATAGTAGCAGCAACTTCAATGAGATTCACCTGCCAACAAATGACTCCTGGTTCCTCTTCAGGTACTATTAACCAATTGCACCAACACCAGAACCAGCAACAAATTGATCATGATAGATTATTACCACCACATCATGAATCAAACTTTGTCAACAACAATAGAGGTGTGCCTAGTAACATTAACATAGTCTCAGATATGAATAGAGGTCAAAGTTTCTTATCTAATATTGAAGGAGAGGCATTGGATTGGTTCTATAACAATAGCAATAGTGGTAATTGTAACCTTAAGGATGATGAAGCCAACATTAATAATATCATGGGAGAGAGCGACATAATTGAATTGGATGCTGCAGATTTGTTGGCAAAGTACTCATACTTTTGCCAAGTTTGTGGGAAAGGGTTTAAGCGTGATGCCAATTTGAGGATGCACATGAGGGCTCATGGTGAAGAGTACAAAACATGTGAAGCCTTGAGCAACCCAATGAAAAACAAGGAGAGTTTAATATTAGGTGAAGGAAGTGTCACAAAGAAATATTCTTGCCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCATGCCAAGTTTCAGCCCTTGAAGTCAATGATTTGTGCCAAAAACCATTACAAGAGAAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCACAAACAGTTCTCGGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAGGACAAGCTTATGGGCCATGTTACTTTGTTCGTGGGACACACCCCAGTTATTCATGGCTTGTCATCATACTCGGGAAAATTAGAACAACGGGCATTGGCATTGCAACAGAATATTGCTGGTGGTTCAAGATGA 1173 0.4237 MMPKATSTSTNDFQELHMFPPVNEYLVSPNSVEASSSSASHSSNSLLFYLSLLKDKLSQLQNLVGVLVSPQQNLPESTPMAISTMNNTIQEIIVAATSMRFTCQQMTPGSSSGTINQLHQHQNQQQIDHDRLLPPHHESNFVNNNRGVPSNINIVSDMNRGQSFLSNIEGEALDWFYNNSNSGNCNLKDDEANINNIMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTCEALSNPMKNKESLILGEGSVTKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNHKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVTLFVGHTPVIHGLSSYSGKLEQRALALQQNIAGGSR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01392 390 Gene3D Classic Zinc Finger 306 356 - -
Pumo11g01392 390 FunFam Zinc finger protein 574 216 240 - -
Pumo11g01392 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Pumo11g01392 390 Gene3D Classic Zinc Finger 213 241 - -
Pumo11g01392 390 SUPERFAMILY beta-beta-alpha zinc fingers 215 245 IPR036236 -
Pumo11g01392 390 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Pumo11g01392 390 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 365 IPR044300 GO:0010044|GO:0010447
Pumo11g01392 390 SMART c2h2final6 270 303 IPR013087 -
Pumo11g01392 390 SMART c2h2final6 308 330 IPR013087 -
Pumo11g01392 390 SMART c2h2final6 217 239 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01392 Pumo-Chr11 44157570 44158742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01392 43 368 C2H2 Transcription Factor Family AT5G22890 51.183 1.72e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01392 - - gmx:100802399 573.548