Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01383 ATGAAGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCACTGAGGAAAATGTGGATGATAATCAGCTCAGTAATACAACAAATGAGTGGCCTGAAAACGGTTTGGGAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAATCTCATGAAGTGTGGCAAGAAGGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTCCTTCACAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGGGAGTTGCAAGAAACAACTCCTTCTTCTGCCTCAGTAGAGCAGGACCTTGAGCAGCAGAGTAGGGATCAAATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACTTAACCTGCCCTCTTTACCTATACCACCTCCTCTGCCTCTTTGGGACCAGCACCACCATCGTGACAACTGGTCACAGAATAACATAAATAATCAGCGTCTAGTAATTGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTGCAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTACAGAGATCTATAAGGCAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGAAGGAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 1014 0.427 MKEVSGIRIIPNGEIALRKMWMIISSVIQQMSGLKTVWEMRMEKTLVCKNLMKCGKKDGGFQEAVENWLGGPSDHESAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRESLDQLIQSYVERQGHANIDWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSPLNLPSLPIPPPLPLWDQHHHRDNWSQNNINNQRLVIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVIRAYSIQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01383 337 Coils Coil 213 240 - -
Pumo11g01383 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 335 IPR013083 -
Pumo11g01383 337 ProSiteProfiles Zinc finger RING-type profile. 285 324 IPR001841 -
Pumo11g01383 337 SUPERFAMILY RING/U-box 284 330 - -
Pumo11g01383 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 53 337 - -
Pumo11g01383 337 CDD mRING-HC-C3HC5_NEU1 285 334 - -
Pumo11g01383 337 Pfam Zinc finger, C3HC4 type (RING finger) 282 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01383 Pumo-Chr11 43953204 43954831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01383 285 331 C3H Transcription Factor Family AT3G06140 42.553 1.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01383 - - gmx:100804184 541.962