Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01382 ATGGAATCCTGGAACCGCAGATTGCTTCTACAGAACGAGGACGTTCCCCTCTCCATGCCCCCTCTCCCTCACACCAAACACGCCACTAACGCATCATCATCCTCGCCGCCGCAATCTTCAAGCTTCGGAACCCCTCTGCAAGTGTCGATTCGTCCCGTTTTCTCTTCGAGCGTGGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGCTTCGTCTTCCTGTACTTCCGCCAATTCTCCTCCGAAACCGGCTCCTTCCGCCGCCGCTCCCCGCCGTGCCGGGGGGAGGACTCCGCCGCCGCCGCCGCGAAGAAGTCCCTGCCGGTGGTGCCGCACCACGGAGACGCGGAGTGCGCGATATGTCTGGAGGAGTTCCGAGAGGGGGACGCGGTGAAGATGATTCCGTACTGCAAGCACGTGTTCCACCCGCAGTGCATTGACACGTGGCTCGATAAGCACGTCACGTGCCCCGTGTGCCGGTGCAGTGAGCTCTGTGGAGCGACGCAGAATCGAGAAGAAGAGAGTGAAGAGGTGGGGTCGGTGTCAGTGTCAGTGAGAGGACATGAAGAAGAAGAAGAAGTGGTTCCAAATTTGGATTAA 609 0.5878 MESWNRRLLLQNEDVPLSMPPLPHTKHATNASSSSPPQSSSFGTPLQVSIRPVFSSSVAYVFLILFTTFFFIGFVFLYFRQFSSETGSFRRRSPPCRGEDSAAAAAKKSLPVVPHHGDAECAICLEEFREGDAVKMIPYCKHVFHPQCIDTWLDKHVTCPVCRCSELCGATQNREEESEEVGSVSVSVRGHEEEEEVVPNLD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01382 202 MobiDBLite consensus disorder prediction 25 40 - -
Pumo11g01382 202 CDD RING-H2_PA-TM-RING 120 163 - -
Pumo11g01382 202 MobiDBLite consensus disorder prediction 15 40 - -
Pumo11g01382 202 MobiDBLite consensus disorder prediction 175 202 - -
Pumo11g01382 202 SMART ring_2 121 162 IPR001841 -
Pumo11g01382 202 PANTHER RING FINGER DOMAIN-CONTAINING 30 165 - -
Pumo11g01382 202 Pfam Ring finger domain 120 163 IPR001841 -
Pumo11g01382 202 SUPERFAMILY RING/U-box 115 165 - -
Pumo11g01382 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 167 IPR013083 -
Pumo11g01382 202 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01382 Pumo-Chr11 43948812 43950042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01382 54 183 Rapid Response to Elicitors AT3G05200 36.301 6.09e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01382 - K10664 gmx:102663476 264.233