Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01375 ATGTCTCGTCGCGGTGGCTCTAAGCAGCAACCAGATTCACGCCGTCCGGCACCTTCGTCCGCGGCGTCGTCTTCCGCCGGAAGAGGCCGCGGCCGTGGCCGCGGCCGCGGAGAATCCTCCGTTCCGGCTCCTTCTCCAGTGAATGCACCATCCGCTCCTCCGCCGGCTTCGACAATCGGCGTTCCTTCCGGCGCGGCGCCTGTTGGTGCCGCGGCGTCGCCTTCCGCCGGAAGAGGCCGCGGCCGTGGCCGCGGAGAGTCCTCCGTTCCGGCTCCTTCTCCGGTGAATGCACCATCCGCTCCTCCTCCGGCTTCGACAATCGGCGTTCCTTCCGGCGCGGCGCCTGTTGGTGCCGCGGCCCCGTCTCCGGTGGTGGCATCTCTGACTTCCGTGGTCGAGAAGCAACTGACATTGCAGACGCCGGCGCCGTCGTCGTCGAAGGCGGTGAGGTTCCCTGACCGGCCAGGGTTCGGCAGAGCGGGGAAGAAAATCCAAGTGCGCGCGAATCATTTTCAAGTGCAAGTCGCCGAACAAGATCTATTTCACTACGATGTCTCTATTAGTCCTGAGATAACTTCGAAGAAAGTTTCCAGAGATGTTTTGACTTTGCTTATCCAAGCGTACCGTGAAAAGTTGCTCGGTAATCGCATACCGGCTTACGATGGGCGAAAGAGTCTTTTCACCGCTGGACCCTTGCCCTTCGAATCGAAGGATTTTGTGATCGTGTTGAAGGACGATGATGAACCAGGCTCGTCTTCTGCTTCTGCTAGGAAAAAACGTGAACGAGAGTTTAGGGTCACAATCAGGTTTGCTTCCAAGACTGACCTTCACCACCTCAATCTGTTTCTCAGTCGCCGTCAGCTCGATTGTCCTCAAGAAACTATTCAGGCTCTTGATGTTGTTCTTCGTGCTACACCATCGGAAAGGTTCGATGTTGTGGGAAGATCGTTTTTCTCACCTGCTTTGGGGCAAACTGGAACGCTTGGTAGCGGAACAGAGTATTGGAGGGGCTATTACCAGAGCCTTCGCCCAACTCAGATGGGCCTGTCTCTCAATATTGATGTGTCAGCGAGGGCATTTTATGAGGCAATTCCCGTGATTGACTTCATTAATAGGCATTTTAGGTTCAATCTTTCCAGGCCTTTGTCCGATCAAGATCGAGTCAAGCTTAAGAAAGCTTTGAGAGGAGTCAAGGTAGAGGTTACTCATGGAAAGAATCTTAGACGTCATAAAGTCACTGGAGTCACAAAAGAACCACTCAGAAATTTAATGTTTACTCTTGATGACAATAGAACAAAAAGCTCAGTTGTTCAATATTTTCATGAGAAATACAATATTGTGTTGAAACATACGCTTCTTCCTGCTCTTCAAGCTGGTAGTGACACTAAACCGATTTATTTGCCTATGGAGCTTTGTCAAATTGTGGCTGGACAGAGATATACAAAGAAATTGAATGAGGAGCAAGTCACTAATCTTTTAAGGGCAACTTGTCAGCGTCCTCGTGATAGAGAAAACTCTATCAGACAGGTTGTTAGGCAAAGCAATTTCAGCACAGATAAATTTGTGCGTCACTTTGGAATTCAAGTGAGGGAGGATCCAGCATTGGTTGATGCTCGAGTTTTGCCTCCCCCAATGCTAAAATATCATGATACAGGTAAAGAATCGCGTGTTGAACCCAGGATGGGTCAATGGAATATGATTGATAAGAAAATGTTTAAAGGTGGTGATGTGCAATTTTGGACTTGCCTCAACTTTTCTGGAAGAACAAACAGAGAGTTGCCAGCTGACTTTTGTTATGAGTTGGTCAATATGTGTAAAAGCAAGGGCATGAGTTTTAATACAGATCCTTTACTGCCCATAACATCTGTTCAAAGTAGTCAAATAGAGAGTGCTCTTGTGAATGTGCATAAGCAGTCCATTGCAAGACTAGCAAACCTGAGGATAGAAGGAAGACTCCAATTGTTGATCATAATTTTGCCCGATTTCAAGGGGTCATATGGGAAAATAAAGCGTATATGTGAAACTGAGCTAGGAATAGTATCTCAGTGTTGTCAGCCGAGGCAAGTTGTAAAGATGAACAAGCAATATCTTGAAAATGTGGCCCTCAAGATAAATGTGAAGGTTGGTGGTAGTAACACAGTATTGAATGATGCATTTGCTCGAAGAATTCCTCATTTGTCTGACAAACCAACAATAATCTTGGGTGCGGATGTAACACATCCACAGCCAGGAGAAGATTCTAGTCCTTCTATCGCTGCAGTAGTGGGGTCCATGGATTGGCCTAACGTAACAACGTACAGAGGAATTGTCTCTGCTCAGACTCATCGTGAAGAAATCATTCAAGATCTTTATAATACATATGAAGATCCTGTGAAGGGAAAGACGCATTCGGGAATTATCAGGGAGTTATTTCGTGCTTTTTATTCGTCAACTAATCGGAAGCCAGAGAGGATTATATTCTACAGGGATGGAGTAAGCGAGGGCCAATTCAACCAGGTTTTGCTGTACGAGATGGATGCAATACGAAGGGCTTGTGCCTCACTACAAGAAGGCTATTTACCCCCTGTTACTTTTGTGGTGGTCCAGAAAAGACACCACACAAGGTTATTTCCTGTAGATCACGGACGTCGTGATCAGACAGATAGAAGTGGAAATATAATGCCAGGGACTGTCGTAGACACACAAATATGTCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATACAAGGAACTAGTCGACCAACACATTATCATGTGTTGTTCGATGAAAATAAATTCACTGCTGATGAGTTGCAAATTTTTACGAATAATTTGTGTTATACGTACGCAAGGTGTACCCGATCAGTTTCAATAGTTCCCCCTGCGTATTATGCACATTTGGCTGCTTTCCGAGCTCGCTACTACATTGAAGGTGAAACATCAGAAGCTGGTTCAGCAAGTGGAGGCCGGGCCGCAAACTTTGAGGTGAGATTGCCCTCGGTTAAGGAGAATGTGAAAGACGTGATGTTTTTCTGTTGA 3030 0.468 MSRRGGSKQQPDSRRPAPSSAASSSAGRGRGRGRGRGESSVPAPSPVNAPSAPPPASTIGVPSGAAPVGAAASPSAGRGRGRGRGESSVPAPSPVNAPSAPPPASTIGVPSGAAPVGAAAPSPVVASLTSVVEKQLTLQTPAPSSSKAVRFPDRPGFGRAGKKIQVRANHFQVQVAEQDLFHYDVSISPEITSKKVSRDVLTLLIQAYREKLLGNRIPAYDGRKSLFTAGPLPFESKDFVIVLKDDDEPGSSSASARKKREREFRVTIRFASKTDLHHLNLFLSRRQLDCPQETIQALDVVLRATPSERFDVVGRSFFSPALGQTGTLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVIDFINRHFRFNLSRPLSDQDRVKLKKALRGVKVEVTHGKNLRRHKVTGVTKEPLRNLMFTLDDNRTKSSVVQYFHEKYNIVLKHTLLPALQAGSDTKPIYLPMELCQIVAGQRYTKKLNEEQVTNLLRATCQRPRDRENSIRQVVRQSNFSTDKFVRHFGIQVREDPALVDARVLPPPMLKYHDTGKESRVEPRMGQWNMIDKKMFKGGDVQFWTCLNFSGRTNRELPADFCYELVNMCKSKGMSFNTDPLLPITSVQSSQIESALVNVHKQSIARLANLRIEGRLQLLIIILPDFKGSYGKIKRICETELGIVSQCCQPRQVVKMNKQYLENVALKINVKVGGSNTVLNDAFARRIPHLSDKPTIILGADVTHPQPGEDSSPSIAAVVGSMDWPNVTTYRGIVSAQTHREEIIQDLYNTYEDPVKGKTHSGIIRELFRAFYSSTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRRACASLQEGYLPPVTFVVVQKRHHTRLFPVDHGRRDQTDRSGNIMPGTVVDTQICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQIFTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSEAGSASGGRAANFEVRLPSVKENVKDVMFFC 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01375 1009 Gene3D - 723 1009 IPR036397 GO:0003676
Pumo11g01375 1009 FunFam Argonaute 10 540 716 - -
Pumo11g01375 1009 ProSiteProfiles PAZ domain profile. 364 476 IPR003100 GO:0005515
Pumo11g01375 1009 Pfam Argonaute linker 1 domain 313 362 IPR014811 -
Pumo11g01375 1009 FunFam Protein argonaute-2 357 481 - -
Pumo11g01375 1009 CDD PAZ_argonaute_like 363 475 - -
Pumo11g01375 1009 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 143 975 - -
Pumo11g01375 1009 MobiDBLite consensus disorder prediction 1 108 - -
Pumo11g01375 1009 Gene3D paz domain 358 480 - -
Pumo11g01375 1009 Pfam N-terminal domain of argonaute 162 302 IPR032474 -
Pumo11g01375 1009 SMART Piwi_a_2 654 974 IPR003165 GO:0003676
Pumo11g01375 1009 SUPERFAMILY PAZ domain 163 515 IPR036085 GO:0005515
Pumo11g01375 1009 Pfam Argonaute linker 2 domain 502 548 IPR032472 -
Pumo11g01375 1009 Gene3D - 540 717 - -
Pumo11g01375 1009 MobiDBLite consensus disorder prediction 1 26 - -
Pumo11g01375 1009 SMART DUF1785_2 311 363 IPR014811 -
Pumo11g01375 1009 Pfam Mid domain of argonaute 559 637 IPR032473 -
Pumo11g01375 1009 FunFam protein argonaute 10-like 722 1009 - -
Pumo11g01375 1009 Pfam PAZ domain 388 493 IPR003100 GO:0005515
Pumo11g01375 1009 CDD Piwi_ago-like 520 973 IPR045246 -
Pumo11g01375 1009 SUPERFAMILY Ribonuclease H-like 647 974 IPR012337 -
Pumo11g01375 1009 ProSiteProfiles Piwi domain profile. 654 974 IPR003165 GO:0003676
Pumo11g01375 1009 Pfam Piwi domain 656 973 IPR003165 GO:0003676
Pumo11g01375 1009 SMART PAZ_2_a_3 368 507 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01375 Pumo-Chr11 43857763 43863597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01375 141 1009 Eukaryotic Initiation Factors Gene Family AT1G48410 58.989 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01375 K11593 - gmx:100805246 1554.27