Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01366 ATGGGGACGCGAGCCATAGCTTTGGTAGGGAGGTACGTGCTCAAGGATTTTCCCGGAAACGGAGTTTTTCTCGGGAAAGTGGTGTACTACGAGTGCGGATTGTACCGGCTGAATTACGAGGATGGCGATTCCGAGGATCTGGACAGTGCAGAGGTCCGCGCCATCCTCGTGAAAGATGGGGAGTTTGATAAAGACTTGGCCCGGAGGAGGGCCGTGTTGGAGAAAATTGTGGCCAAAAATAATGTAAAGGCTGAAGATGTTTCGAAGAATGGCCGTGAGGAAGGGAATAAGGAGGAATCGGCCGTTGAAGCCACTGAATTGAAAGTTGAGAGCAATGAAGAGGGGAATGATAATGATGATGATGATGATGATGATGGGGAGGATGATTCCTCCAGTGACTCGGGCTTGGGGGAAAGCGAGCCTGCGGTTGGGATGGAGTCACTGCCGCCTTTGCCGCTGCCGCCGGAGTTGCCGTTGTCGTCCGGCACCGTTGGTGTACCGGAGGAGTCCGTGTCGCATTTATTTGCTGTGTACGGATTCCTCAGATCATTCAGCACCCGGCTATTTCTTATGCCATTTACTCTGGACGAGTTTGTGGGTGCTGTAAACTGCCGTGTTCCAAACACGCTGTTCGATGCCGTTCACGTTTCTTTGATGAAAGTGTTGCGGCGGCATCTTGAAGCCCTCTCATCAGAGGGCTCAGAGATAGCTTCAAAATGCCTCAGGTGCAATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTCTTTGTAATTCAGTATTTAGTAGTCAGTGGACACACAACTGCTCATGAATGGAGAGGATTTTATGAAGAGGTTTCCACTGACGAATATTACTTATTGCCTGTCAGTAGGAAGTTGATGATATTGCAAATTCTATGTGACAATGTTTTGGAATCCGAGGAGATTGTAACGGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATGGATTATGATGGAGAAGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAATCCAGCCAAGATACGCCAATACTTCAGCTTGGGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTCTATTTCATATTCCAGAGATACAGAAAGCACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTTTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCTGAGTGCAAAATTAATATGATGGGGACAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTAGTTGCGAACACTTACTTGTGCTGAATATTGGGAATGATGAATTTCATCATAGATATTACAACCAGAAGGACATTCTCAAAGTTCTCCAAGTGCTTAATGGATCCATGCAGCACAGACAAATATACCATGGTATTTGCATGGCAGTGCTGCAGTATTGGAGTCTTCCGGAAAGTACTTTATTACTTCCTCCTTTGGGTGAAACCCCTCTAAGTCCTGCTCCTCAATGCAATGGCAGCAGTAATGAGGGCCCTCCTTCCATGTGCTCTTTGGTAAATGGTCAATTTAGTAATTATGACCATGCAAATGATACAGGGTTGCCTATAAATGTTTCTTTGCAAACCAAAGAAAGCACCCAAGCAGGTTTTGAAAAGTGTGAGCGCAATGTAACCAATGATCTTGCATACATGGGTTTCTCCTATAAGCCTCTGACGTACATTAATTACTATACACATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTTCCCTTCTTTACTCAGAGGAATCTAGATCAGAGGGCCATGTGTCAGACAATCAGAGGAAAAATGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAGTGCTATAAAAATGCTTGCTGGTTTTTCTCCTATAAGAAGTGGAGAGGGAATACTCCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCTTAAGTTCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCCACAACATTTAGTGCTATCAAGCCACTTTTACTTAAACTAGAGGAGAACATTCGAACGATTGCTTTTTGTGGGGACTGGGTTAAGCTGACGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCTACTATTGGAACAGCACAGAAACGTGCACCAATTGGGAGGCGTTACAAGAAGCGGTCAGCTAATGATGAAGCTACAGCTGATGGTTGCCCTGAAAGCTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGAAAAGCAGCGCGTCAAGGTGGTTCAAGAAAAATTTCTGGCATTTTTTATGCTGATGGCTGTGATATCCCGAAAAGAAGTAGACGACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCCGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAATTTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGACGAAAAATGTTGTTCAAATAGAGCAAGATCCAGAAGGAACGGAAAAGTATTGGTTTTTTGAAACACGTATTCCTTTATATTTAGTAAAAGAGTATGAAGAAGGTAATGGAAACATGCCATGTAATGAGGAGCGCTTGAATACTGCATCTGAGTTGCTGCACAGAAGGCAGTTGAAGGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTCGGGATGCTCACAAGTGCAATGCATGCCAAGGTTATTGTCACGAGGGCTGTTCCACAAGATCAACAGTCTCTGCAAATGAAGTTGAGTACTTGACCACATGCAAGCAATGCTACCATGCCAGATTACTTGCTCAGAAAGAGAATAATAATGAATCGCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACCCTGGGACATTTTTGAAGGGATCAAGGCCTAAATCTCATGATCAAGTACTGAAATCTTCCAGGACAAAGGCTAATAATCCTGACATGAAACAAGTTACTTCTGTGACGGCTTTGAAAGGAACAAAGGCTAAATGTTATGAACAAGAACCGACTTCTACCAGGACAAAGGATAATCATTTTGACATGCCTCAAGTTGCTTCTGAGGCCACTTCGACAGGAAAACGCCCTCGCAAAAATTGTTCTTGGGGTATCATATGGAAGAAGAAAAATAATGAAGATACAGACAATGATTTCAGGCTCAGAAACATACTTTTAAAAGGGGGTTCAAACATGCCACAATTAAAACCTGTTTGTCACTTGTGTCGTAAGGCATATATGTCTGATCTGATGTATATTTGCTGCGAGACATGCCAAAATTGGTATCACGCGGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTGGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAGACAAGAGGGAAAGAAGTCACGCGCAAGGCCTACAAAGAAAGAGTATTCTGGAGCAGATTCTGATACAGGAGCAATCTCTGATATGAGAGAGTTTGAAGCTGCTACTCCTGTCTTTCTTGTAGAGGATGGTCATATTCCTGTCTTTCCTGTAGAGGATGATCCTCTTCTTTTCTCTCTTTCGAGTGTTGAGCTGATAACAGAACCTAAGACAGATGGGGATGTTGAGTGGAACAGTGTCTCCGTGACAGGGCTTCAGAAACTGCCAGTGAGAAGGAATGTTAAGCATGAGGGGGATGGTGATGTTTCTTTTGGAGGTATGCCTTTGCATGCTGAATTCTCAACCAATGGCGAGACAGGTAATCTGTCCCAACCTGCAGAGGTATCTCCACCTTTAGAATATGCGTCTGCTGTTGACTTTGACAACAAGCTGCTGAATGACTCTGATAATGTAAATTATGAAGATTACATGGAGGATTTTGAACCCAATACCTACTTCTCTCTAACGGAACTGCTGCAGCCAGATGATGGTAGTCAGTTTGAGGGAGTTGATGTGTCTGGAGACTTGTCAGGATATTTGGAAAATTCTAGTACCCTTATTCCTGAAGAATGTGGAGATGTTAAAACAGAACTTACATTTTCCTTGCAAGACACCGGCGTGGACTTGTCAGGATATTTGGAAAATTCTAGTACCCTTGTTCCTGAAGAATGTGGAGATGTTAAAACAGAACCTGCATTTTCCTTGCAAGACACCGGTGGGGACTTGTCAGGATATTTGGAAAATTCTAGTACCCTTATTCCTGAAGAATGTGGAAATGTTATAACAGAACCTTCATTTTCCTTGCAAGACACCGGCTATAGTTGTATGAAATGTTCACAAATGGAACCAGCCCCTGATCTCTTTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAATTACCGTCTAGGGTTGGAAGCTGGAGATGTGGGAATTGCCGGGATTGGTAA 4959 0.4332 MGTRAIALVGRYVLKDFPGNGVFLGKVVYYECGLYRLNYEDGDSEDLDSAEVRAILVKDGEFDKDLARRRAVLEKIVAKNNVKAEDVSKNGREEGNKEESAVEATELKVESNEEGNDNDDDDDDDGEDDSSSDSGLGESEPAVGMESLPPLPLPPELPLSSGTVGVPEESVSHLFAVYGFLRSFSTRLFLMPFTLDEFVGAVNCRVPNTLFDAVHVSLMKVLRRHLEALSSEGSEIASKCLRCNDWSLLDSLTWPVFVIQYLVVSGHTTAHEWRGFYEEVSTDEYYLLPVSRKLMILQILCDNVLESEEIVTEMNIRRESEVGMDYDGEDILPSEVGLRRIQPRYANTSAWEDKEATKFVSASNAVNQPGSSISYSRDTESTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMMGTTIAKGTSLRGAEIFGKDLYGQLFMGSCEHLLVLNIGNDEFHHRYYNQKDILKVLQVLNGSMQHRQIYHGICMAVLQYWSLPESTLLLPPLGETPLSPAPQCNGSSNEGPPSMCSLVNGQFSNYDHANDTGLPINVSLQTKESTQAGFEKCERNVTNDLAYMGFSYKPLTYINYYTHGDFAASAAAKFSLLYSEESRSEGHVSDNQRKNASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALSATKSAIKMLAGFSPIRSGEGILPSIATYIIYMEECLRGLVVGPFLSSSYRRQWRKQVEQATTFSAIKPLLLKLEENIRTIAFCGDWVKLTDDWLVEFSMVQSATSTIGTAQKRAPIGRRYKKRSANDEATADGCPESFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGCDIPKRSRRLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKICYGIAFGSQKHLPSRVTKNVVQIEQDPEGTEKYWFFETRIPLYLVKEYEEGNGNMPCNEERLNTASELLHRRQLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAHKCNACQGYCHEGCSTRSTVSANEVEYLTTCKQCYHARLLAQKENNNESPTSPLLLQGRENNPGTFLKGSRPKSHDQVLKSSRTKANNPDMKQVTSVTALKGTKAKCYEQEPTSTRTKDNHFDMPQVASEATSTGKRPRKNCSWGIIWKKKNNEDTDNDFRLRNILLKGGSNMPQLKPVCHLCRKAYMSDLMYICCETCQNWYHAEAVELEESKISGVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRARPTKKEYSGADSDTGAISDMREFEAATPVFLVEDGHIPVFPVEDDPLLFSLSSVELITEPKTDGDVEWNSVSVTGLQKLPVRRNVKHEGDGDVSFGGMPLHAEFSTNGETGNLSQPAEVSPPLEYASAVDFDNKLLNDSDNVNYEDYMEDFEPNTYFSLTELLQPDDGSQFEGVDVSGDLSGYLENSSTLIPEECGDVKTELTFSLQDTGVDLSGYLENSSTLVPEECGDVKTEPAFSLQDTGGDLSGYLENSSTLIPEECGNVITEPSFSLQDTGYSCMKCSQMEPAPDLFCEICGILIHSQCSPWVELPSRVGSWRCGNCRDW 1652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01366 1652 SMART PHD_3 1063 1111 IPR001965 -
Pumo11g01366 1652 SMART PHD_3 1255 1303 IPR001965 -
Pumo11g01366 1652 SMART PHD_3 393 436 IPR001965 -
Pumo11g01366 1652 SMART PHD_3 1605 1650 IPR001965 -
Pumo11g01366 1652 ProSiteProfiles DDT domain profile. 168 228 IPR018501 -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 1316 1335 - -
Pumo11g01366 1652 Pfam PHD-finger 394 436 IPR019787 -
Pumo11g01366 1652 CDD Tudor_AtPTM-like 9 56 IPR047365 -
Pumo11g01366 1652 ProSitePatterns Zinc finger PHD-type signature. 394 435 IPR019786 -
Pumo11g01366 1652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 445 IPR013083 -
Pumo11g01366 1652 SUPERFAMILY FYVE/PHD zinc finger 366 437 IPR011011 -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 1316 1340 - -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 86 112 - -
Pumo11g01366 1652 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 271 315 IPR028942 -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 113 134 - -
Pumo11g01366 1652 CDD PHD2_CHD_II 394 435 - -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 86 164 - -
Pumo11g01366 1652 SUPERFAMILY FYVE/PHD zinc finger 1254 1309 IPR011011 -
Pumo11g01366 1652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1250 1309 IPR013083 -
Pumo11g01366 1652 ProSiteProfiles Zinc finger PHD-type profile. 391 438 IPR019787 -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 1157 1171 - -
Pumo11g01366 1652 SMART testlast3 168 228 IPR018501 -
Pumo11g01366 1652 PANTHER PHD FINGER FAMILY PROTEIN 3 1616 - -
Pumo11g01366 1652 Pfam DDT domain 169 225 IPR018501 -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 1121 1171 - -
Pumo11g01366 1652 MobiDBLite consensus disorder prediction 1121 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01366 Pumo-Chr11 43744933 43753531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01366 1524 1652 PHD Transcription Factor Family AT5G35210 35.878 2.60e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo11g01366 DDT 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01366 - - gmx:100808261 2818.49