Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01365 ATGGAGCAGCAGAACCATAACGACACCGATCAGTTTTTGACTCTGGGCCCCACACCGAACGACAACAACAACAACAACAACGTTGTTGTTAGCACCGTTAACGTTGGAGTTGGTTCTGGTTCGGACCTTTTTGTGACCGTAGCGAAGTCCGAGGCTGTAGGTTCGGGACAGGTGGTGAAGAGAGGAAGGGGGAGGCCTCGGAAGTACGACGTTGTCGGGAACACGGTGTCTCCGGGGACGGCGCCGCCGGGATTTTCCGATCAAACTGCCAAGAGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAACTGCAGATTCTAGCTTCCATTGAAACAGCTGGGGGAAGCATTATACCTCACGTGCTGACTGTGAAACATGGAGAGGATTTGGTCAGCACGATAATGTCATTTTTTGACAAAGGCCCTCGAGCAGTTTGCGTACTTTCAGCCACTGGTGCTGTTTCAGATGTGGCCATTCGCCAAAATTCTGCTTCTCATGCTATTATAAGACTTGAGGGTACCTTTGAGATATTGTCTTTATCTGGAGCATGTACCTACGCATGTAGCCCTACTGGTCCAGTTCGTAAAAGTGGCACGTTGAGTGTTTCATTGGCTAGATCTGATGGGAGGGTTTATGGAGGTGTTCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAACTTGTTATGGCCTCTTTCAAGCAAAACATCAGTAGCCAAATCAAGAGAAAACAGTTGTCTGAATCTTCCAATCCTCCCCTTCTGCTGGGCAATTCAGATACAGAAAGGGATCAATTGAAAGTTCCAAGGTTGACAGAAGCTGAGCAGAGTTGTCCTTCACAACCACCAACAACACTTGAGCCAACAGCAACAACTAATGGTGTAGCAGATAATGTCTTTCCTGCAACATCCAATGGAGTGGCAGATAATGTTGTTACTCCAGATCACAATGTGCACTCTGTTGATGGTGTTGTTGATTTGGACAGCCAGTTCCCGCAGCCCGCATCAGACGATTCAGACCAAAGGACTTCTGCATATGTGAACCCAATTGTCATAGAGTTATGA 1062 0.4812 MEQQNHNDTDQFLTLGPTPNDNNNNNNVVVSTVNVGVGSGSDLFVTVAKSEAVGSGQVVKRGRGRPRKYDVVGNTVSPGTAPPGFSDQTAKRGRGRPRGSGKLQILASIETAGGSIIPHVLTVKHGEDLVSTIMSFFDKGPRAVCVLSATGAVSDVAIRQNSASHAIIRLEGTFEILSLSGACTYACSPTGPVRKSGTLSVSLARSDGRVYGGVLESALVAACPIQLVMASFKQNISSQIKRKQLSESSNPPLLLGNSDTERDQLKVPRLTEAEQSCPSQPPTTLEPTATTNGVADNVFPATSNGVADNVVTPDHNVHSVDGVVDLDSQFPQPASDDSDQRTSAYVNPIVIEL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01365 353 MobiDBLite consensus disorder prediction 273 301 - -
Pumo11g01365 353 MobiDBLite consensus disorder prediction 241 301 - -
Pumo11g01365 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 264 IPR039605 GO:0003680
Pumo11g01365 353 Gene3D - 118 250 - -
Pumo11g01365 353 ProSiteProfiles PPC domain profile profile. 113 253 IPR005175 -
Pumo11g01365 353 MobiDBLite consensus disorder prediction 241 257 - -
Pumo11g01365 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 233 IPR005175 -
Pumo11g01365 353 CDD DUF296 118 232 IPR005175 -
Pumo11g01365 353 PRINTS AT-hook-like domain signature 89 100 IPR017956 GO:0003677
Pumo11g01365 353 PRINTS AT-hook-like domain signature 60 70 IPR017956 GO:0003677
Pumo11g01365 353 MobiDBLite consensus disorder prediction 58 100 - -
Pumo11g01365 353 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Pumo11g01365 353 SMART AT_hook_2 60 72 IPR017956 GO:0003677
Pumo11g01365 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 239 - -
Pumo11g01365 353 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01365 Pumo-Chr11 43699588 43702848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01365 59 244 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 45.876 2.66e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01365 - - gsj:114378162 518.464