Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01350 ATGACGATAACCGTGGAGATGTTGGTGGTGGTCACAACAATGCCAATGGTATCGGTGTCGGGGGTGGCGATGTCAGTGCCAATGGTTGTGGTGGCAGTGCCAATGCCAGTGGTGGTGGTGCCGGTAATGGTGGTCGGCACTAGTGGTGATGTTACCGATGGCCATGGCGAATGTCTAACCGGGCACACATGCAATGTCGACTGGAGAAAGAAGTTTAGGGAGACACGGCACCCGGTGTATAGGGGTGTACGGCAAAGAAACGGGAACAAATGGGTGTGTGAAATAAGGGAACCAAACAAAAAATCAAGGATTTGGTTAGGGACTTACCCTACTCCTGAAATGGCAGCTAGGGCACATGACGTGGCAATCTTGGCACTTAGTGGCACCTCAGCAAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTCCCAATTCCAAAGTCTCGTTCTGCTATAGATATAAGAGAAGCAGCAAAAGCTGTTTCTACTGCTGAGGATTTCTTACCAAACACTGCCTTTACTTCCTCTCACAACAATTCTCATTTTGGCGAAAATGGGAATGCTGATGACCCTTGTTTGAACATTGGCATGCACAATGATGAGTCCGAAACAATGTTCTTTGATGAGGAGGCACTTTATAATATGCCAGGTTTGTTGGATAGTATGGCAGAGGGTTTGCTTATTACACCGCCGTCTATGAAAAGAGCAATGGATTGGGACGATATTGGTTGTGTAATAGACCTCACTCTCTGGACAAATTAA 759 0.4677 MTITVEMLVVVTTMPMVSVSGVAMSVPMVVVAVPMPVVVVPVMVVGTSGDVTDGHGECLTGHTCNVDWRKKFRETRHPVYRGVRQRNGNKWVCEIREPNKKSRIWLGTYPTPEMAARAHDVAILALSGTSAKFNFPDSVSLLPIPKSRSAIDIREAAKAVSTAEDFLPNTAFTSSHNNSHFGENGNADDPCLNIGMHNDESETMFFDEEALYNMPGLLDSMAEGLLITPPSMKRAMDWDDIGCVIDLTLWTN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01350 252 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Pumo11g01350 252 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Pumo11g01350 252 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Pumo11g01350 252 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Pumo11g01350 252 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Pumo11g01350 252 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Pumo11g01350 252 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Pumo11g01350 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 69 251 IPR045277 GO:0003700
Pumo11g01350 252 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Pumo11g01350 252 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01350 Pumo-Chr11 43454585 43458941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01350 69 251 AP2-EREBP Transcription Factor Family AT4G25490 50.543 1.54e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo11g01350 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01350 - - gmx:100793751 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01350 11 43454585 43458941 Pumo11g01350 11 43454585 43458941 ECH
Pumo4g03778 4 77816964 77817722 Pumo11g01350 11 43454585 43458941 PCT