Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01340 ATGAGCGGCGATGGCCGGAGACGGGACCGGAGGGACAACAGAGCGTCGAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCAAAATTAGGGTTCGATCTCTTCTCAGAGGGCGAAAAGCGTCTCGGATGGTTACTCACTTTTTCATCCTCTTCTGTTGATGATGAAGACAGTTACAAAGTGTACAGTTGCGTTGATCTTTACTTTGTTGCACAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCTTATTTCTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGCAACAATTGATGGAGGTCAAGAAAGACCTGATGGATACTGTTGAAAGAAATAAGGCCAAGTTTGACGTTGCAGAAGCCTATTTGCCCATGTTAACAGAAAGAAGAGAACATAAACCTCAGGATTTTCTTGATTGCATAACCGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAACGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGCATTTGCGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTCGGGGATGATATAGAAGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAGGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCACATGCAAGAGGTGAAACCTGGTATCTACGTGACGTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGAAGAGCAACCCATCTTGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGATACAAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCATTGGAGGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTCTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGCCCTAACAAACACCAATCTGATCCAGCGAAGTTTTATAATAATCATCTCCTTGAGAGTGAGACATACATTGGTGGTCACGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTACACTAGAGCCATCTGCCTATCAGCAACTGATTAACAACCTTGATCGAGATCTACAATATGCTATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGTGCCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATCATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAACAACAACAAAGCCTTATCCCACTATTCTAAGAAGAAGTCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCTGTTACTGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAACTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTACCTGGTTCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAAGAAGTTTACAATCTCATATCCTTGTGTCATGCTTAATGTTGATGTGGCAATAAATAACACAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCGCAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGTAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACCTTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACTATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTGGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTGTCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGACTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGTCTTTAAATCAATGAGCAGGAATGAGCACTCAAAAAAGCATAATGACTCAAATCGTGTCCCTCTCGTGATGGATGATGAGATTGTTAATGAGTTGGAGGACTTTGGAAACAAGGACAGGAGTTCTACATGCAGACCTAGGCCAATTATACGGCATTATGAAGCTAATAATGAACGACATTCAAGGAAGCTCAATGATCAAGAAGATTTCGAGCAACAGCATAATAATGACAATAGCAGCAAGGATCAGCTACATTCACCATTACAACAAAATGTTGACAGAAATGTAGATTATCAAGGATGGCTTCAAATAAAGAAGCGAAAGTGGAAAGATATTCTGGAAATGAGAAAGAAGCGAAGATTGGAGAATTCAAAGAAATCTGACCGTGTTAATGGTGTTCTTGAACAAATGAGTGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAACGTCACTGGCAGATAATACAACTAGTTCCCAGTTCACTGATGGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCACCAATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTGAGTGAATTGCATATGAAGACCACGACAGAATGTGCTTATCTCGAACAATCTATATCCTTCTTTTATTTGTACCATAGCATCTCTGAGGGACGGGCTATATACGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAACTTTTCTTGAAAGACAATTTCACGATGCTTGCCAGTCTTTGTCTATTGAGCCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAGAGAGCAATAAATGGTCAAAGTCATGGGAGGGAAAATCACGTGCCTATGGTTGCTGTCATTGAAATCCCAAATGTTCAATTAGTAAAATTGGGCATCCGAGCTCTGGATGATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAACTGGAATGCAACGTTGTGCTGCCTCAGTCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCTGGGGAACTTTGAACTTGACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGAATTAATGGTGAACAGAACTGTTTTGTCGACGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAATACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACGAATGATCAGAATGGTTTTGACGAATCTACCTCATGTGCACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCAGATGCAGTTACATCTGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCTACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACGGTTGTATTTGCAAACTTTTCAAAGATTATTATAGACACCGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAATCTAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATCTGATGATGCCGTAAATGATGAATCTCAAGTAGACATTATATCGAGTTGGAATATTGCTGAATACTTGCCAAAAAAAATCCAAGATCATTTTGTTTACATTGTTTCTCAATTCATGTATATTCCCTGGAAGTATGCAAAAAATCAAGCACAAATCAGGGCATCATTGCAGAATGGTGACTCCTGTACCCCATCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCAGAAATAACGGAATTTATCAAAGGGCAGATTGGCTCTTACTTCACACACAAACTGCTAGGAATTGTCCACGATATTGGTCTTCATATGAAGGGGATGAACAGATCAGAAAACAGCCAAGGCCATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAGAATTTGCTCAAATATGTTGATGTTAAGGAGTTTGCTCCAGAAGCTAAGTTTCATGGTCCTTGTCATTCCTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGTGATTCTACTTTATTAACTGAGGAGTGGCGTTGTGCGGTGCCACAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACTGTAAGACAAAGAGAACGGCTATACCACCTGCAAGATCTGGTGTGTACCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGTTCATTTAAATGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAAATTTTCTTGAACATAGCTTCTCGTCAGAAATTTCAACTTCTCCACGAATGTACCTCTTGGATTTTAGAACTTAGATAG 6627 0.405 MSGDGRRRDRRDNRASKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTFSSSSVDDEDSYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEMDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMEVKKDLMDTVERNKAKFDVAEAYLPMLTERREHKPQDFLDCITDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFRVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGFKMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPAKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLRDVPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYHALKTQIESEFVDDSENNNKALSHYSKKKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDVFKSMSRNEHSKKHNDSNRVPLVMDDEIVNELEDFGNKDRSSTCRPRPIIRHYEANNERHSRKLNDQEDFEQQHNNDNSSKDQLHSPLQQNVDRNVDYQGWLQIKKRKWKDILEMRKKRRLENSKKSDRVNGVLEQMSGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLMGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSPITEEFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPTFLERQFHDACQSLSIEPPPRNGINFKVDYVAHVKDAEAVMQRAINGQSHGRENHVPMVAVIEIPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAASVQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINGEQNCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLGFGHELDSGAFSTNDQNGFDESTSCAQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALYQLLHKVMQKVFALLLAEFRKLGATVVFANFSKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDDAVNDESQVDIISSWNIAEYLPKKIQDHFVYIVSQFMYIPWKYAKNQAQIRASLQNGDSCTPSINIGAAEAFESEITEFIKGQIGSYFTHKLLGIVHDIGLHMKGMNRSENSQGHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFILSNVICSYCNDCRDLDLCRDSTLLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDLVCTRCHQVKAAHLAEQCACAGSFKCKEDASEFREKMQIFLNIASRQKFQLLHECTSWILELR 2208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01340 2208 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Pumo11g01340 2208 Gene3D - 952 1136 IPR042087 -
Pumo11g01340 2208 FunFam DNA polymerase epsilon catalytic subunit 763 948 - -
Pumo11g01340 2208 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Pumo11g01340 2208 CDD POLBc_epsilon 503 1133 - -
Pumo11g01340 2208 MobiDBLite consensus disorder prediction 1 27 - -
Pumo11g01340 2208 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2206 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Pumo11g01340 2208 Pfam DNA polymerase family B 766 1075 IPR006134 GO:0000166|GO:0003677
Pumo11g01340 2208 SMART DUF1744_2 1520 1906 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Pumo11g01340 2208 Pfam Domain of unknown function (DUF1744) 1538 1906 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Pumo11g01340 2208 SMART polmehr3 239 853 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo11g01340 2208 Gene3D - 238 468 IPR036397 GO:0003676
Pumo11g01340 2208 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Pumo11g01340 2208 CDD DNA_polB_epsilon_exo 240 443 - -
Pumo11g01340 2208 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Pumo11g01340 2208 Gene3D Palm domain of DNA polymerase 764 948 IPR023211 -
Pumo11g01340 2208 MobiDBLite consensus disorder prediction 1199 1255 - -
Pumo11g01340 2208 SUPERFAMILY DNA/RNA polymerases 486 1125 IPR043502 -
Pumo11g01340 2208 MobiDBLite consensus disorder prediction 1199 1243 - -
Pumo11g01340 2208 Gene3D DNA Polymerase, chain B, domain 1 50 228 - -
Pumo11g01340 2208 FunFam DNA polymerase epsilon catalytic subunit 952 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01340 Pumo-Chr11 43346276 43376855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01340 5 2205 Core DNA Replication Machinery Family AT2G27120 67.407 0.0 3032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01340 K02324 - gmx:100812003 4229.86