Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01325 ATGTATAGCAATTTCAAAGAGCAAGCAATAGATTACGTGAAACAAGCGGTGCACGAAGACAATGAAGGAAACTACGCGAAAGCGTTTCAACTTTACATGAACGCGTTGGAGTATTTTAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGATTATCTTCGTCGGGCTGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCGGCCCGGCCTCCAGCGGGGATGCCGCGGTCGCCACAAGGCCCAAGACGAAGCCCAAGGACGGAGGCAAAGACGGCGACGGGGAGGATCCCGAGCAGGCCAAGCTCCGGTCCGGGCTCAATTCCGCGATCTTGAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTGGAGAGCGCGAAACAGGCCTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACAGGTAAACGACAACCTTGGAGGGCGTTTTTGTTGTACGGACCACCGGGAACGGGTAAATCGTATTTGGCTAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATCATATTCGTTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGAATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTACGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGCATGGGCAATATACATGATGATGTTCATTGAAGGATTGGTGCACCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAACATTTGGCTCGCAAGTCAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAGGAATCCTGAGGGTATGTGGATCCCATGTGGATCAAAGCAACAGAGTGCAATACAAACTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCTAAGATCCTGCCACCTCCTATATCGAGAACGGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGACTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1341 0.4817 MYSNFKEQAIDYVKQAVHEDNEGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTDYLRRAEEIRAVLDDGPGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRSGLNSAILREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKAWAIYMMMFIEGLVHLGDTPHNLTESDFEHLARKSEGFSGSDISVCVKDVLFEPVRKTQDAMFFFRNPEGMWIPCGSKQQSAIQTTMQELAAKGLASKILPPPISRTDFDKVLARQRPTVSKTDLDVHERFTKEFGEEG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01325 446 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Pumo11g01325 446 Gene3D - 6 75 - -
Pumo11g01325 446 Pfam Vps4 C terminal oligomerisation domain 379 443 IPR015415 -
Pumo11g01325 446 MobiDBLite consensus disorder prediction 73 109 - -
Pumo11g01325 446 Gene3D - 298 426 - -
Pumo11g01325 446 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Pumo11g01325 446 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Pumo11g01325 446 Gene3D - 125 434 IPR027417 -
Pumo11g01325 446 CDD MIT_VPS4 4 76 IPR045253 -
Pumo11g01325 446 FunFam vacuolar protein sorting-associated protein 4A 298 426 - -
Pumo11g01325 446 MobiDBLite consensus disorder prediction 90 109 - -
Pumo11g01325 446 SUPERFAMILY MIT domain 2 76 IPR036181 -
Pumo11g01325 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 428 IPR027417 -
Pumo11g01325 446 SMART AAA_5 162 298 IPR003593 GO:0016887
Pumo11g01325 446 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Pumo11g01325 446 CDD RecA-like_VPS4 124 294 - -
Pumo11g01325 446 PANTHER AAA DOMAIN-CONTAINING 19 444 - -
Pumo11g01325 446 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Pumo11g01325 446 SMART smart 2 79 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01325 Pumo-Chr11 43131713 43135961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01325 161 367 Calmodulin-binding Proteins AT3G56690 33.493 1.47e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01325 K12196 - gmx:100801165 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01325 11 43131713 43135961 Pumo11g01325 11 43131713 43135961 ECH
Pumo4g03766 4 77644227 77650449 Pumo11g01325 11 43131713 43135961 PCT