Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01319 ATGGGTTTGATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTAATTCATATCTAAATTCTAATACAATATCTTCATCCTCTTCTTCTTCTTCTCCTTCTTATTCTTTTACTCAACATGAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAAAAAGCCTCAAAAGATGAAAATTGTGGAGTACAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGACACTAAAGGGCATGCTGATGAGGCTGTTGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGAGTCCTCAAAGAGAAGCTTCCATGGATGCTCCTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCCCAAGGATGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTCAGAACCCTCCAAACCCATTACAAAAGAAAGCATGGCACAAAGCCATTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTTAAAGACCACATTAGATCCTTTGGAAAGGGACATAATCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAGTGCATCACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 969 0.418 MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNSYLNSNTISSSSSSSSPSYSFTQHEFVQETIQFLPILSEKASKDENCGVQSFEVKEEKVEQVTVALHIGLPDTKGHADEAVDEKMIFHVKEEEESSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01319 322 SMART c2h2final6 242 262 IPR013087 -
Pumo11g01319 322 SMART c2h2final6 158 180 IPR013087 -
Pumo11g01319 322 SMART c2h2final6 205 237 IPR013087 -
Pumo11g01319 322 PANTHER ZINC FINGER PROTEIN WIP2 21 313 IPR043584 GO:0003700|GO:0010468
Pumo11g01319 322 Pfam Zinc finger, C2H2 type 158 177 IPR013087 -
Pumo11g01319 322 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Pumo11g01319 322 Gene3D Classic Zinc Finger 157 180 - -
Pumo11g01319 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Pumo11g01319 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 262 IPR013087 -
Pumo11g01319 322 SUPERFAMILY beta-beta-alpha zinc fingers 149 181 IPR036236 -
Pumo11g01319 322 Gene3D Classic Zinc Finger 238 298 - -
Pumo11g01319 322 SUPERFAMILY beta-beta-alpha zinc fingers 228 262 IPR036236 -
Pumo11g01319 322 FunFam Zinc finger protein WIP2 211 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01319 Pumo-Chr11 43034896 43038798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01319 7 310 C2H2 Transcription Factor Family AT1G08290 55.457 1.09e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01319 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01319 - - gmx:100802773 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03764 4 77616259 77620270 Pumo11g01319 11 43034896 43038798 PCT