Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01315 ATGGCGAGCCAAAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGACCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCTCATCATCAGGCCTAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCAGCTTTATTCACAGGCAGGCCTTCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAATGAACACTCTTTCAAGCAAAACTGAGCTCCAATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAGCAGCAACAACAACAGGAGACAGCAACAGATGCCTCAAGAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGTTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGACTAAAGCTCACCCACCTTGAACAAGACCTTCATAGAGCTCGCTCTCAGGGTCTGCTTATGGGTTGTGGTACTGCTGGTGGCAGTATAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGTTAGAGGATGACCAGCGGCACACGGCGGAGCTGCGGTCAGGGCTGCAGGCGGCGCTGTCGGACGGGGAACTTAGGGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTATTCAGGCTGAAAGGGGTGGCTGCTAAAACAGATGTGTTTCATCTTATTAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAGACCATCAGAGCTCATTACAATGTTGACACCACAGTTGGAGCCCCTAGCGGAGCAGCAAATTATGGGCTTATATGGTCTCCGGCATTCGTCACTGCAAGCAGAAGAGGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTAGTTGACACCATTGCCGGCAGCCCCGTCGTGGACGGTGTGCAACAGATGGTGGCAGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTATTGGTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGACTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAGCGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAACCTTCTCAGAATCATTTCTCAAATTTCTGA 1479 0.4686 MASQRIGETGLSESGPSSHHVPYGVLHGINTSSSGLINQGSAFDFGELEEAIVLQGIKIRNDEAKASALFTGRPSATLEMFPSWPMRFQQTSRGGSKSGGESTDSGSGMNTLSSKTELQFETESPISIKASSSDHHQAFDQHLQQQQQQQETATDASRAGTSSQNQSAAKSPQEKRKGVGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLHRARSQGLLMGCGTAGGSISSGAAMFDMEYARWLEDDQRHTAELRSGLQAALSDGELRVIVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFRPSELITMLTPQLEPLAEQQIMGLYGLRHSSLQAEEALTQGLEQLQQSLVDTIAGSPVVDGVQQMVAAMGKLANLEGFIGQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRETLISDDNSCQTTTELQMVQPSQNHFSNF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01315 492 SUPERFAMILY Leucine zipper domain 190 232 IPR046347 GO:0003700|GO:0006355
Pumo11g01315 492 Pfam bZIP transcription factor 189 230 IPR004827 GO:0003700|GO:0006355
Pumo11g01315 492 Gene3D - 189 238 - -
Pumo11g01315 492 SMART brlzneu 186 244 IPR004827 GO:0003700|GO:0006355
Pumo11g01315 492 PANTHER TRANSCRIPTION FACTOR TGA9 122 464 - -
Pumo11g01315 492 Pfam Seed dormancy control 271 345 IPR025422 GO:0006351|GO:0043565
Pumo11g01315 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Pumo11g01315 492 MobiDBLite consensus disorder prediction 84 172 - -
Pumo11g01315 492 ProSiteProfiles DOG1 domain profile. 253 461 IPR025422 GO:0006351|GO:0043565
Pumo11g01315 492 MobiDBLite consensus disorder prediction 81 192 - -
Pumo11g01315 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Pumo11g01315 492 Coils Coil 216 236 - -
Pumo11g01315 492 MobiDBLite consensus disorder prediction 177 192 - -
Pumo11g01315 492 FunFam BZIP family transcription factor 189 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01315 Pumo-Chr11 42967014 42974948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01315 142 492 bZIP Transcription Factor Family AT1G08320 70.621 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo11g01315 DOG1 9.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01315 K14431 - gmx:100101904 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03759 4 77536734 77544687 Pumo11g01315 11 42967014 42974948 PCT