Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01312 ATGTACACTCATCATCAACATCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACATCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGAGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTTCAGGCCTTACCTTATATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGCGACACACAAAATCTGCAACTCAGCCATAAATCCAGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACGCATGTGAACAATTTAAACCTTGCCCCTCAGTCTAATAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAAATAGAGGTGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTCCTGCAGCTCCGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAGAATTTGGGAGTAGTAGGACTTGAAGCTGCCAAACTTCAACTTTCAGAGCTAGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGAGCTGAAGGAGATACAAGGATTTAGCCCCCACCAAACACAAACCAACCAGCCAAATGCAAATGACTGTTCCATGGACAGTTGCCTCACATCCTGTGAGGGATCACAAAAAGAGCAAGAGATACAAAATGGGGGGATGAGCTTAAGACCCTTCAATATTAATGTCCACACATTCATGGAACGAAAGGAAGTCATAGAGGGTCCCAATCTCAATAACCTACCAAACACTGACCTCAAGTGGTGTGATCCAGTGAAGAAGAACACCTTCCTTACCCCATTGAGCATGCATGCAGAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAACCAGTGAAACCAGTGGCTGATCATAAAGTTTCTCAAGATTATGGATTGCCATCTTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1221 0.4308 MYTHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTSDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNATHKICNSAINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSELVSKVSSQCLNSAFSELKEIQGFSPHQTQTNQPNANDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNINVHTFMERKEVIEGPNLNNLPNTDLKWCDPVKKNTFLTPLSMHAERSPSNLSMSIGLEGETENGSTIRTEPVKPVADHKVSQDYGLPSYFAASKLDLTTENKDTKTSCKQLDLNGFSWN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01312 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 282 IPR044848 GO:0003700
Pumo11g01312 406 Pfam MYB-CC type transfactor, LHEQLE motif 153 199 IPR025756 -
Pumo11g01312 406 Gene3D - 45 103 - -
Pumo11g01312 406 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Pumo11g01312 406 Coils Coil 155 175 - -
Pumo11g01312 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pumo11g01312 406 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g01312 406 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Pumo11g01312 406 MobiDBLite consensus disorder prediction 1 18 - -
Pumo11g01312 406 FunFam Myb family transcription factor 45 103 - -
Pumo11g01312 406 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01312 Pumo-Chr11 42912973 42916480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01312 78 406 G2-like Transcription Factor Family AT3G04030 50.733 4.53e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo11g01312 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01312 - - gmx:100805237 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03752 4 77343781 77346392 Pumo11g01312 11 42912973 42916480 PCT