Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01309 ATGATGAGCCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCAAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAACTTTTAGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCAGGACCAGGATTGCTTCCAAGCTATCCACCACATGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCAGGCTATGCTGCTCCTGGTCTTGCACAGCCCTTGCTATATGGAGGAGGTCAAACTCCCGCTGGAATGGCAATGATGCCTATGCTTTTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCTCCACCCTCACATCATAGAGGTGGCAGGGGTGGTGGCAGTGGGAGCGGCAACAAGAATGCCGGCAGTTCAAGCAAGGGAAGGCACAACAATGATGGTGGCCACGGGCGCAGATACCGGCCATATTAG 717 0.4854 MMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGSGSGNKNAGSSSKGRHNNDGGHGRRYRPY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01309 238 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 230 - -
Pumo11g01309 238 MobiDBLite consensus disorder prediction 109 130 - -
Pumo11g01309 238 MobiDBLite consensus disorder prediction 190 238 - -
Pumo11g01309 238 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g01309 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Pumo11g01309 238 SMART rrm1_1 33 106 IPR000504 GO:0003723
Pumo11g01309 238 SUPERFAMILY RNA-binding domain, RBD 20 126 IPR035979 GO:0003676
Pumo11g01309 238 Gene3D - 14 133 IPR012677 -
Pumo11g01309 238 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 130 - -
Pumo11g01309 238 MobiDBLite consensus disorder prediction 112 126 - -
Pumo11g01309 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01309 Pumo-Chr11 42875408 42879296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01309 34 211 Eukaryotic Initiation Factors Gene Family AT2G23350 30.688 4.01e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01309 K13161 - gmx:100806658 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01309 11 42875408 42879296 Pumo11g01309 11 42875408 42879296 ECH