Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01296 ATGGAAGATCATCCACCCGGGTTTCGTTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACACAACAAGCTAGAAGGTCCAAGAAATGCCATAGCCATAGACAGAGTTATCCCAGTTATTGACATCAATGGCGTTGAACCATGGAGCCTTCCAACACTTGCTGGGGAGCTTTGTCGTGGGGACACGGAGCAATGGTTTTTCTTCTCGCCCGGTCAAGAAAGGGAAGCCAGAGGAGGCAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAAGCTACTGGTTCTCCTGGCTATGTTTACTCTTCTGAAAACAAAGTCATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGGAAAGCCCCCATGGGAAGAAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCCAAGTAGTCCCTAATCAATCCATCCCTCAGTTGAGATGGGAATTCAGCTTGTGTCGGGTATATGTCGTATCTGGAAGCTTTCGAGCATTTGATCGACGCCCATTAGAGAGGGAAGGAAGCAGAGTCGTCGAGGGTTCATAG 555 0.4793 MEDHPPGFRFFPTEEELVGFYLHNKLEGPRNAIAIDRVIPVIDINGVEPWSLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSENKVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAIQVVPNQSIPQLRWEFSLCRVYVVSGSFRAFDRRPLEREGSRVVEGS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01296 184 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Pumo11g01296 184 Pfam No apical meristem (NAM) protein 5 136 IPR003441 GO:0003677|GO:0006355
Pumo11g01296 184 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Pumo11g01296 184 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Pumo11g01296 184 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01296 Pumo-Chr11 42674035 42675661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01296 7 172 NAC Transcription Factor Family AT5G22380 70.659 1.12e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g01296 NAM 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01296 - - gmx:100781321 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03740 4 77217153 77219149 Pumo11g01296 11 42674035 42675661 PCT