Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01285 ATGGCGAACAAATTCCACTCTGTTGCGGAGATTACTCCCGAGAAGCAAAACTGGAAAATCATGGTGAGAGTCATACGGCTATGGGTGGTGAAAGACTTGGGAAAGTCAAAGATACCTTTCTCAATGGAATTGTTACTGGGAGTTCGAATCCATGCTTCTCTGAGAAAGACGGTCATTTACAAATTTCAGAAAGATTTACGAGAAGGCAGTGTATACTCCATTCAGTCATTTGATGTGGCTGAAAATAGTGGTACTTTTAGAACATCCACTCATAAGTACAAGATTAACTTCAATTTGAAGACTAAACTAGAAGAGTTGGATAAAGCTTTGGTACCCGAAAAAAACTATGACTTTGTGGCTATTCGTAAGATTATTGGTGGTGAATGGGATGATGATTACTTAGTGGTAGATGTGATGGGCGTCCTTACAAGAGTGGGAACTGAGAGACAGTTCTCTAAGAATGGAAGCAACACAAAAATGAATGTTATTTGTGTAGAAGCTGATGGGGATAAGATAGAGTGTACTCTATTCGGGAATTATGTAGACAAGCTGAATACTTTCCTTGCTGCTGGAGATGTGAATAATACTGTTGTAATTGTCCATTTAGCGAAAGTGAAATGCTTTCAAGTTTTTGCTACTGTCAACAACATAATGGAAGATGAAGATTGGTTTTATACTGCCTGTCTTTGCAATAAGGGTGTTTATCCAGACTCTCAAATGTGGTTTTGTGAAAAGTGTGAAAGGCATGTTGTCAAGGTGGTTGTAAGGTATAGGATCAAGGTCAGGGTCACTGATCATACTGATTCTGCAACTTTTGTGATTTTTGACCGGGATGCTACCATGCTCTTCAACAAATCATGTATTGACATGTACGAAGAGCAAGAGAAGGACTTAATGCCTAAGTTTTCTGTGGTTGGTGTGGATCATGAAAATGAATCTCAAATGGATGAAATAAAAACAACAGATCTATCAAAGGATTCACAGGACTTTACTCCTTTGAAGGCTAACTTGGCAAGTCCAAACCAAGGAGGAAGTTTGATTGGGCCTGACTCTCAAGATAAGGAACAATCTGATGAAGCCCAAACTGATTCTGCAGAACTTTTTTCTCCTACTAGAACTGGATTTGCATCTTAA 1134 0.3889 MANKFHSVAEITPEKQNWKIMVRVIRLWVVKDLGKSKIPFSMELLLGVRIHASLRKTVIYKFQKDLREGSVYSIQSFDVAENSGTFRTSTHKYKINFNLKTKLEELDKALVPEKNYDFVAIRKIIGGEWDDDYLVVDVMGVLTRVGTERQFSKNGSNTKMNVICVEADGDKIECTLFGNYVDKLNTFLAAGDVNNTVVIVHLAKVKCFQVFATVNNIMEDEDWFYTACLCNKGVYPDSQMWFCEKCERHVVKVVVRYRIKVRVTDHTDSATFVIFDRDATMLFNKSCIDMYEEQEKDLMPKFSVVGVDHENESQMDEIKTTDLSKDSQDFTPLKANLASPNQGGSLIGPDSQDKEQSDEAQTDSAELFSPTRTGFAS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01285 377 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
Pumo11g01285 377 SUPERFAMILY Nucleic acid-binding proteins 4 106 IPR012340 -
Pumo11g01285 377 CDD RPA1_DBD_C 204 297 IPR047192 -
Pumo11g01285 377 MobiDBLite consensus disorder prediction 325 351 - -
Pumo11g01285 377 CDD RPA1_DBD_A_like 19 102 - -
Pumo11g01285 377 Gene3D - 5 108 IPR012340 -
Pumo11g01285 377 SUPERFAMILY Nucleic acid-binding proteins 115 209 IPR012340 -
Pumo11g01285 377 MobiDBLite consensus disorder prediction 313 377 - -
Pumo11g01285 377 Gene3D - 183 321 IPR012340 -
Pumo11g01285 377 Pfam Replication factor-A C terminal domain 208 299 IPR013955 -
Pumo11g01285 377 MobiDBLite consensus disorder prediction 362 377 - -
Pumo11g01285 377 SUPERFAMILY Nucleic acid-binding proteins 206 300 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01285 Pumo-Chr11 42582991 42585335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01285 1 209 Core DNA Replication Machinery Family AT5G08020 21.918 6.94e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01285 - - vun:114169438 242.276