Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01270 ATGTCGGCCTCCCGCGCTCCCCCCGCCGGTGCCGCCGCCGCCGCCGCTAACTCGCCGGACCAGATCATCCACTCCATGAAACGCCAACTCCCCTTCTCCTCTATGAAGCCGCCCTTCGTCGCCGCCGGCGACTACCACCGCTTCGCCCCCGACCACCGCCGCGCCCTCGACCACGACGCCGCCGAAGCCATCGTCGTCAAGACTCCCCTACTGAAGCGGAAGAGTGAAGTGGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGATCCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGACGGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAATGCAACAGACTTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGGAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTTAGTGAAGATGAAAACAATGAGAAGATGCTTTTTGTTACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCCGACGAGGCCGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATGTTGCACCCAAACTTCCACCCAGTCCAGATGTTAACAAACATCAATCAACAGTAGTCCCAGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGTTCCCGGGCCTAGTTCAGATTTTACTACCTCCCAGGATTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGATCCACTTCAAGAAGATTATCGTATGACTCGCGAGAACACTACGACCCCAAGTCATCCTTCAAATGTTGGTGAAGTGTCTTCTGCATCTAAACCTACCGGTGGTTGA 1401 0.4732 MSASRAPPAGAAAAAANSPDQIIHSMKRQLPFSSMKPPFVAAGDYHRFAPDHRRALDHDAAEAIVVKTPLLKRKSEVADFEADSGDRMTPGSTEAANSPFQTPVSGKTGKGGKSSRLTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMEERRLDEQIREMQERLRDLSEDENNEKMLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDLYLVSQFEEKFEEINGVDVAPKLPPSPDVNKHQSTVVPEDRGKDIEVQGQEVPGPSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYRMTRENTTTPSHPSNVGEVSSASKPTGG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01270 466 MobiDBLite consensus disorder prediction 432 466 - -
Pumo11g01270 466 MobiDBLite consensus disorder prediction 78 117 - -
Pumo11g01270 466 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Pumo11g01270 466 MobiDBLite consensus disorder prediction 90 117 - -
Pumo11g01270 466 Coils Coil 225 266 - -
Pumo11g01270 466 SUPERFAMILY E2F-DP heterodimerization region 226 329 IPR037241 -
Pumo11g01270 466 MobiDBLite consensus disorder prediction 440 466 - -
Pumo11g01270 466 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Pumo11g01270 466 Coils Coil 163 183 - -
Pumo11g01270 466 CDD E2F_DD 223 329 IPR032198 GO:0046983
Pumo11g01270 466 PANTHER TRANSCRIPTION FACTOR E2F 89 431 IPR015633 GO:0000978|GO:0006357
Pumo11g01270 466 Gene3D - 141 214 IPR036388 -
Pumo11g01270 466 FunFam E2F transcription factor 1 141 214 - -
Pumo11g01270 466 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Pumo11g01270 466 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Pumo11g01270 466 Gene3D - 219 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01270 Pumo-Chr11 42320203 42326387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01270 21 465 E2F-DP Transcription Factor Family AT5G22220 57.053 2.21e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo11g01270 E2F_CC-MB 5.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01270 K06620 - gmx:100819817 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01270 11 42320203 42326387 Pumo11g01270 11 42320203 42326387 ECH