Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01261 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGCCGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTTTTGAAAAAAATAAGGCTTGCAAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTACTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTATTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAAGATCAGGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACTGCATCTGAGGTGTTAAAGCACCCTTATCTGACAGCCTTATGTTGA 801 0.4257 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGTYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLTALC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01261 266 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Pumo11g01261 266 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01261 266 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Pumo11g01261 266 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01261 266 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Pumo11g01261 266 PIRSF ILK 1 261 - -
Pumo11g01261 266 SUPERFAMILY Protein kinase-like (PK-like) 4 263 IPR011009 -
Pumo11g01261 266 CDD STKc_Nek 7 262 - -
Pumo11g01261 266 Gene3D Transferase(Phosphotransferase) domain 1 90 265 - -
Pumo11g01261 266 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 263 - -
Pumo11g01261 266 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01261 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01261 Pumo-Chr11 42253182 42256634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01261 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 1.68e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo11g01261 Pkinase 1.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01261 K08857 - gmx:100784761 539.265