Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01256 ATGGTGGGTATGATGAAAGTTTGCAGCTTTGTGTTTTTCACCCTGATGATCACAATGGGTTGTTATGGTGTCACAGACCCAAATGATCTCAAAATTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCAGACAATGGAAATGACCCTTGTGGCCCTCCTTCATGGACTTATGTGTACTGTTCTGGAGGGAGAGTGACTCAGATTCAGACCAAGAATCTAGGTCTTCAAGGATCATTGCCTCCAAACTTTAACCAACTCTCAGAGCTTCAGAATTTGGGTCTTCAACGCAACAACCTTAGTGGACCGTTGCCTACTTTCAGTGGATTGTCCAAATTGCAATATGCTTTCTTGGATTACAATGAGTTTGATTCAATCCCATCTGATTTCTTCAATGGACTCACCAGCATCAGGGTCTTGTCTTTGGAGGAAAACCCTTTGAATGCTACCACAGGGTGGTATTTTCCTAAGGACTTAGAAAATTCTGCGCAATTGACTAATCTTTCTCTGGTGAATTGTAATTTGGTTGGAACATTGCCTGATTTCCTAGGCACATTGTCCTCTCTCACAAATCTGAGGCTTTCAGACAACAAATTGACTGGTGGCATTCCAGGTAGTTTTAATCAGTCTTCAATCCAGGTTTTTTGGTTAAATGATCAAGAAGGAGGTGGGATGACAGGTCCTATTGATGTCATTGCTTCAATGACATTCCTCAGACAGGTTTGGCTTCATGGAAACCAGTTCACTGGGACAATTCCACAGAACATTGGAAGTCTAACTTCCTTGCAGGAGCTCAACCTCAATAGCAATCAACTTGTTGGTTTGATTCCAGATTCCTTGGCAAATATGGACCTTCGGATACTGGTGTTAAATAATAACAGGTTCATGGGTCCAATACCAAAGTTTAAGGCTGCCAAAGTATCTTATGATTCCAATTTATTTTGTCAGTCCAAGCCTGGGCTTGACTGTGCCCCTGAAGTTACTGCACTGCTGGATTTTCTCAATAATCTGAATTACCCTTCAGGTCTTGCTTCTAAATGGTCAGGTAATGATCCGTGTGGAGAACCGTGGTTCGGATTGAGCTGCGATCGCAATTCAAAGGTATCTATAATCAATTTGCCAAGACAAAATCTGAATGGTACACTGAGTCCCTCTCTGGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCAGAAAATAGTATTACTGGCAAGGTTCCGACTAATTTTACTGAATTGAAATCTTTGAGGTTGTTGGATTTAAGTGATAACAATGTTGAGCCACCACTGCCAAACTTTCATGGTGGTGTGAAGGTTATTATTGAGGGTAACCCTCGTCTTGGTAATCCACCTGTAAGTAGTCCTAGTCCCATGCCTATTACAAGCACACCACCTTCAAGTGCACAGCCTTCACCGCACAACCCATCTCCATCACCATCCCCACCATCCCCACCGTCCTCCCATATGCAACCTTCTCCAAGGCAGAGTCCAAGCTCGAATTCGAATCAGTCTAGTTCTGCCCAGTTAAAACCCCACCCAAATGCCTTCAAAAGATTCAAAACAGTAGCAATAGTAGCTGGAGCTGCAATCTTTACGTTTGTAGCTCTTTTAGTTACTGCTCTATTCATATGTTGCTTGAAGAAGGAAAAAGCCTCCTTGGATTCTCCTAGCTCTATTGTGGTTCACACTAAAGATCCATCTTATCCAGAAAAGATGATTAAATTTGCAGCTTCAGATAGCACCACTGGAAGCTTATCATCAAAGACAGGGAAAAGTTCTCTGACCAACATTAGTGGTGAAACTGAGAGTTCTCATTTTGAGGCTGGCAACATTGCCATCTCTATCCAAGTTCTACGCAAGGTCACCAACAATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAGGGTAAACTAGAAAATGGCACAAAAATAGCAGTGAAGAGAATGGAGTGTGGAGCTCTTAGCAGTAGAGCACTGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGACACCGGCATTTGGTGTCCCTGCTAGGCTTTCCATTGAAGGAAATGAAAGACTTTTGGTTTATGAATATATGCCTCTGGGTGCTCTAA 2139 0.4254 MVGMMKVCSFVFFTLMITMGCYGVTDPNDLKILNDFRKGLKNPELLKWPDNGNDPCGPPSWTYVYCSGGRVTQIQTKNLGLQGSLPPNFNQLSELQNLGLQRNNLSGPLPTFSGLSKLQYAFLDYNEFDSIPSDFFNGLTSIRVLSLEENPLNATTGWYFPKDLENSAQLTNLSLVNCNLVGTLPDFLGTLSSLTNLRLSDNKLTGGIPGSFNQSSIQVFWLNDQEGGGMTGPIDVIASMTFLRQVWLHGNQFTGTIPQNIGSLTSLQELNLNSNQLVGLIPDSLANMDLRILVLNNNRFMGPIPKFKAAKVSYDSNLFCQSKPGLDCAPEVTALLDFLNNLNYPSGLASKWSGNDPCGEPWFGLSCDRNSKVSIINLPRQNLNGTLSPSLAKLDSLLEIRLAENSITGKVPTNFTELKSLRLLDLSDNNVEPPLPNFHGGVKVIIEGNPRLGNPPVSSPSPMPITSTPPSSAQPSPHNPSPSPSPPSPPSSHMQPSPRQSPSSNSNQSSSAQLKPHPNAFKRFKTVAIVAGAAIFTFVALLVTALFICCLKKEKASLDSPSSIVVHTKDPSYPEKMIKFAASDSTTGSLSSKTGKSSLTNISGETESSHFEAGNIAISIQVLRKVTNNFASENELGRGGFGTVYKGKLENGTKIAVKRMECGALSSRALEEFQAEIAVLSKVRHRHLVSLLGFPLKEMKDFWFMNICLWVL 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01256 712 MobiDBLite consensus disorder prediction 455 496 - -
Pumo11g01256 712 MobiDBLite consensus disorder prediction 449 516 - -
Pumo11g01256 712 Pfam Leucine rich repeat N-terminal domain 330 368 IPR013210 -
Pumo11g01256 712 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Pumo11g01256 712 FunFam Leucine-rich repeat receptor-like kinase 330 455 - -
Pumo11g01256 712 Gene3D Ribonuclease Inhibitor 330 455 IPR032675 -
Pumo11g01256 712 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Pumo11g01256 712 Pfam Protein tyrosine and serine/threonine kinase 633 700 IPR001245 GO:0004672|GO:0006468
Pumo11g01256 712 MobiDBLite consensus disorder prediction 497 516 - -
Pumo11g01256 712 SUPERFAMILY L domain-like 330 441 - -
Pumo11g01256 712 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Pumo11g01256 712 Gene3D Ribonuclease Inhibitor 27 325 IPR032675 -
Pumo11g01256 712 ProSiteProfiles Protein kinase domain profile. 630 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01256 712 Gene3D Phosphorylase Kinase; domain 1 591 703 - -
Pumo11g01256 712 PANTHER OSJNBA0070M12.3 PROTEIN 7 699 - -
Pumo11g01256 712 FunFam receptor-like protein kinase FERONIA 592 702 - -
Pumo11g01256 712 SUPERFAMILY Protein kinase-like (PK-like) 608 703 IPR011009 -
Pumo11g01256 712 SMART LRR_typ_2 191 214 IPR003591 -
Pumo11g01256 712 SMART LRR_typ_2 418 440 IPR003591 -
Pumo11g01256 712 SMART LRR_typ_2 264 287 IPR003591 -
Pumo11g01256 712 SMART LRR_typ_2 115 138 IPR003591 -
Pumo11g01256 712 FunFam Receptor-like kinase TMK4 27 325 - -
Pumo11g01256 712 SUPERFAMILY L domain-like 25 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01256 Pumo-Chr11 42211207 42213345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01256 81 694 Receptor kinase-like Gene Family AT1G55610 27.410 9.28e-40 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo11g01256 PK_Tyr_Ser-Thr 1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01256 - - gmx:100815045 1108.98