Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01252 ATGGCGACGTACTTTCATGGCAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAACCCAAACTACGTACCCTACTCTGACGCGGCGCAACACCCAACGCAAAACATGCTCCTCGTCAATCCCAACACTAGTAATAACACCAGTCCCACTTCCACCAACGCGCTCAACCTTGGTAACTTTTCCCACGCGCCGCCATCTCCATCTCCCAACAACAACCACCGTGAACAACAACAACAACATCACCTGATTGGGGTTACCATTCCCTCTTCAAACATCCTCGGATCCAACGCTGCCGCCACCGACCCCGCTCGATCATCGTTCCTCGGACATGAATTCTCTGGCTTCCACTGTGCTACTGCCGCCGCCACAACAGCAGCATCATCTCGTGGTAGCTATAACCTATGGGGTTCCATATTTGATCAATCTGCGTCGAATATCATGACAGCAACTGCACACACCCCATCTAGTAATATGGGGTGTGTTAGCAGTGCTGCCATGTCGACGCATATTGGGTTTCACAGGCCTAATCATTTGTCACTAAGCCTTTCTTCACAGCAAACACCATACAGGTCTCTCTCTGGGGAGGTTCATGCTATTTCTCCGGCGAGCCGCGGCGGCGATGATATGAGGGGTTTGCACAACGGAGTTTCTAGCATGAATAGTGTTGTTTTGGGTTCCAAGTATTTGAAAGCAACACAGGAGCTTCTTGATGAAGTTGTGAATGTGGGCAAGGGAATCTCCAAAGGGGAAGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAAGGGAATATTGAATCCACTTCTGGGGTTGGTGATGGTTCGAGCTGTGGAGGGGAGAATAATGATGGAGGCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTACCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATTACCACCAAATGCAAATTGTGATAACATCATTTGAGCAAGCAGCGGGTGTTGGTGCGGCAAAGTCTTTCACGGCCCTTGCCTTGAAGACAATCTCAAAGCAATTTCGGTGTCTCAAAGATGCAATCTCTTCACAAATCAAGACAACGAGCAAGACCTTAGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCGAGGCTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCATTACAGCAGCTGGGAATGATCCAACACAATGCTTGGAGGCCACAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCCTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAGATGTACTTGGAAGAGGTAAAGCAAGAGCCAAACAATGGCTCTGGGGATAACAACACAAATAGATCAAAAGAATCAAGCAAGGAGTTATGGTCAGAAGCTAATGCTGCACAAGAATCTGGTGCCTTGAGACTTGATCAGATTAATGTTCTCCAATCAAAGGCAGAAAGCTTCAACAATAACCAAACCACTTCCCCAACAGAGATCTCCAATTCCAATTCACTCTCAGCATCTCCAATGGGAGGAGGGTCCCTCCAATCTGGTTTCCAATTTGCTGACATGCAAAGTTCAAAGAAGCCAAGAAGCACTTCTGAAATGCAAAACTCTCCAGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTCATGGATCAGAGACAAATAATACTAGAGAAGGAAACAACACCACAAAGTTTGGCATTGAAAACCATGGTGGGGGTTTTGGAGCATTTCCCAATATGGAAGACATTGGAAGGTTTCATCATGTCACTGAGCAACTCGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTCACTCTTGGACTTCCACACAGTACTGAGAACCTTTCCCTCTCCGGAACCCAACATGGATTCCTCTCACAGAATATGCACTTGGGAATGAGAACAACCAATGATAATGAGTTTTGTGGTGCCATCAACACTCCACCTTCTTCTCATTCAGGCACCAGTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2205 0.4671 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPTQNMLLVNPNTSNNTSPTSTNALNLGNFSHAPPSPSPNNNHREQQQQHHLIGVTIPSSNILGSNAAATDPARSSFLGHEFSGFHCATAAATTAASSRGSYNLWGSIFDQSASNIMTATAHTPSSNMGCVSSAAMSTHIGFHRPNHLSLSLSSQQTPYRSLSGEVHAISPASRGGDDMRGLHNGVSSMNSVVLGSKYLKATQELLDEVVNVGKGISKGEESMEGAKKEKMKGNIESTSGVGDGSSCGGENNDGGKQGVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYYHQMQIVITSFEQAAGVGAAKSFTALALKTISKQFRCLKDAISSQIKTTSKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSGDNNTNRSKESSKELWSEANAAQESGALRLDQINVLQSKAESFNNNQTTSPTEISNSNSLSASPMGGGSLQSGFQFADMQSSKKPRSTSEMQNSPGSILSVDMEMKPHGSETNNTREGNNTTKFGIENHGGGFGAFPNMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSTENLSLSGTQHGFLSQNMHLGMRTTNDNEFCGAINTPPSSHSGTSYESIDIQNRKRFAAQLLRDFVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01252 734 MobiDBLite consensus disorder prediction 48 86 - -
Pumo11g01252 734 CDD homeodomain 419 480 IPR001356 GO:0003677
Pumo11g01252 734 SMART prehox3 224 371 IPR006563 -
Pumo11g01252 734 Gene3D - 422 498 - -
Pumo11g01252 734 SMART HOX_1 419 483 IPR001356 GO:0003677
Pumo11g01252 734 Coils Coil 303 323 - -
Pumo11g01252 734 MobiDBLite consensus disorder prediction 275 295 - -
Pumo11g01252 734 MobiDBLite consensus disorder prediction 540 596 - -
Pumo11g01252 734 MobiDBLite consensus disorder prediction 258 295 - -
Pumo11g01252 734 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 505 - -
Pumo11g01252 734 ProSiteProfiles 'Homeobox' domain profile. 416 479 IPR001356 GO:0003677
Pumo11g01252 734 MobiDBLite consensus disorder prediction 488 516 - -
Pumo11g01252 734 MobiDBLite consensus disorder prediction 540 617 - -
Pumo11g01252 734 FunFam BEL1-like homeodomain protein 9 422 484 - -
Pumo11g01252 734 SUPERFAMILY Homeodomain-like 420 485 IPR009057 -
Pumo11g01252 734 Pfam Homeobox KN domain 436 475 IPR008422 GO:0003677|GO:0006355
Pumo11g01252 734 Pfam Associated with HOX 229 370 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01252 Pumo-Chr11 42089279 42093983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01252 1 734 Homeobox Transcription Factor Family AT2G35940 41.985 3.30e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo11g01252 POX 1.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01252 - - gmx:100786883 1208.74