Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01250 ATGGCAGAAGTTGAGATCCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGCAGTGGCTGCTTAAGGCCAAAGATTGTGTGTGTCCTGTTACCAAGCAACCATTGCCAAGAAGCTCTCAATACTTGACCCCTAATCACACTCTTGGGAGGCTGATTCAAGCTTGGTCTTCAGCAAGCACAGCCAATGGTGTTGATCGAATTCCGACCCCGAAAACCCCTTTGAGCATGATCCAAGTTCAGAGGCTTGTGAAGGGTCTTGAGGCTCCTTGTTCTCATGAAACATCGTTGGAGAAGTTGCATGCCTTGGCTACAAGCGAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTGGCCAAGGCTATGGTCAAAGTGATTAAGAAGATTTTCAAAGAAGGAAAAACAAACACCACTTGCATAGAAAAAGCTTTGAGAATTGTTCATCTTCTTTGGAGCAATGATCATGGCATGAAAACTCTAGTTGGGGAGAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGAAGCTTCATTTGGATGACAACAACATCAAGATGGTAAATCAAGCAATGCCCCTTTTGAAGTTGACAATTGAAGTTGCTGATTCAACCCTTTTGGGGAGTTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGTTTTGAGAAAGAAAGCACTCTCTCAACAAGCCATTAAATCTGCTTTGCATGTGCTTATAGAAACTAGCACTGTGGGTAGAAACAGAACGAGGATTGTTGAAGCAGGTGCAGTCACAGAACTCATAGAGCTTGAGCTTCAAAAACCAGAGAAGAACATGACAGAGCTCATATTCAACCTTCTGGCACACCTATGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGAGACACGCTGCGGGCATTGCTGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTAAGGGTTGGAGCCGTGTCAAAGGTTTGCATGCTGCTGCAAGCGGATAGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAACTGTATTTGTTAACTAGGCACCAAAGGTGA 1230 0.4325 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEQWLLKAKDCVCPVTKQPLPRSSQYLTPNHTLGRLIQAWSSASTANGVDRIPTPKTPLSMIQVQRLVKGLEAPCSHETSLEKLHALATSERNRTCMAEAGVAKAMVKVIKKIFKEGKTNTTCIEKALRIVHLLWSNDHGMKTLVGENLDFINSLTWILKLHLDDNNIKMVNQAMPLLKLTIEVADSTLLGSLSLEFFKEMVRVLRKKALSQQAIKSALHVLIETSTVGRNRTRIVEAGAVTELIELELQKPEKNMTELIFNLLAHLCSCADGREQFLRHAAGIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKVCMLLQADSASYLKEKARDILRLHSKVWNNSPCIQLYLLTRHQR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01250 409 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Pumo11g01250 409 SUPERFAMILY ARM repeat 115 382 IPR016024 -
Pumo11g01250 409 Gene3D - 80 392 IPR011989 -
Pumo11g01250 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 79 IPR013083 -
Pumo11g01250 409 SUPERFAMILY RING/U-box 3 78 - -
Pumo11g01250 409 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Pumo11g01250 409 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Pumo11g01250 409 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Pumo11g01250 409 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01250 Pumo-Chr11 42068736 42070114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01250 3 406 U-box Gene Family AT3G11840 41.031 5.49e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01250 - - gmx:100787426 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03711 4 76813004 76814553 Pumo11g01250 11 42068736 42070114 PCT