Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01249 ATGGATGAAATGGAGGTTCCTACCCTTTTCCTCTGCCCAATTTCTTTGCAGCTTATGAGTGACCCTGTCACAGTGTGCACAGGAATCACATACGACAGAGAAAACATAGAGAGATGGTTATTATTTTCATGCAAGAAGAACAAAACCTGCCCTGTCACCAGGCAATCACTTTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTAATCCAAGCTTGGTGCACCAACAATGCATGGCTTGGCATTGAAACCATTTCATCATCTCCAAAGCCAACCATTGACCAAGCTGAAATTGTGAAACTCCTCTTAGAAGCAAAGAAGTTCCCTGAAAAACAGCTCAAGTGTCTTAGAAGGCTTCAATCTATTGCCTTTGAAAGTGAAAGTAACAGAATCTGTTTGGAGTCTACAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAAGTGTTATGAGTGAAGCAGCTATAGAACTCTTGTTTCATCTAAACCCTTCTGAATCTCAGCTTAAGAATGTGATGAACAGTGAGGGGATTCAATTTATTGAGTCTTTGTTTCATGTCTTGAAGCTTGGAAAGTGCCAATCTAGAGCTTATGCAACTGTGCTATTGAAGTCAGCATTTGAGGTGGCTGGTCCAACCCAATTGAGCAATGTCACATCGGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACAAGAGGCTTCTAAGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGGGTAGGAACAGGATCAAAGCAGTTGAGGGTGGTGGGGTTCTAGTCCTCATTGAGCTACTTCTTGATGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATGGTTTTGGACAGGCTTTGTGGCTGTGCAGAAGGAAGGGCAGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCCAAGAAAATTCTGAGGGTTTCTCATGTGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCAATTTGTAAGCATTCAGCCACTCCTAGAGTCCTTAATGAAATGTTGCTATTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAATGGAGGGTAAGTTCCAAGGCCAAGGAGAGAGCTAG 1128 0.4326 MDEMEVPTLFLCPISLQLMSDPVTVCTGITYDRENIERWLLFSCKKNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCTNNAWLGIETISSSPKPTIDQAEIVKLLLEAKKFPEKQLKCLRRLQSIAFESESNRICLESTGAIDFLASTMMINSSVMSEAAIELLFHLNPSESQLKNVMNSEGIQFIESLFHVLKLGKCQSRAYATVLLKSAFEVAGPTQLSNVTSELFVEIIRVLRDQISQEASKAALKLLVELCSWGRNRIKAVEGGGVLVLIELLLDVSERRACELMLMVLDRLCGCAEGRAELVNHGAGVAVVAKKILRVSHVASDRGVKILTSICKHSATPRVLNEMLLFGAVSKLCLVLQMEGKFQGQGES 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01249 375 PANTHER WDSAM1 PROTEIN 3 366 IPR045185 GO:0061630
Pumo11g01249 375 SUPERFAMILY ARM repeat 109 338 IPR016024 -
Pumo11g01249 375 CDD RING-Ubox_PUB 7 62 IPR045210 -
Pumo11g01249 375 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Pumo11g01249 375 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Pumo11g01249 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pumo11g01249 375 Pfam U-box domain 6 81 IPR003613 GO:0004842|GO:0016567
Pumo11g01249 375 SUPERFAMILY RING/U-box 3 85 - -
Pumo11g01249 375 Gene3D - 84 368 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01249 Pumo-Chr11 42027707 42029344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01249 2 365 U-box Gene Family AT2G35930 51.081 1.64e-126 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01249 - - gmx:100778012 509.22