Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01246 ATGCCGAGAGAGACCAGCCAGGAGACTCTCCGTCGCCGTCGTTGGCAAGCGGATCTCCGGCTCAGTCGCCGGCGCAACAGCAGCAACAGCCTGCCGCCGGCGACGGCGGCTCAGGTGCAGCAGCACAGTCCGGTGGTTGGTCCAAGGCTCGCGCCGACTTACTCAGTGGTGAATGCGATTTTGGAGAAGAAGGAGGACGGGCCGGGGCCGCGGTGCGGCCACACGTTGACGGCGGTGGCGGCGGTCGGAGAAGAAGGGACGCCGGGGTACATTGGTCCGAGGTTGATTTTGTTCGGCGGTGCCACTGCGCTTGAAGGGAATTCCGCGGCCTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTAGCTGGTGCGACTGCTGATGTCCACTGTTATGATGTCATAACTAATAAATGGTCTAGGATATCTCCCATTGGCGAGCCTCCAACCCCAAGGGCTGCACATGTGGCAACTGCTGTGGGAACAATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCTGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAACGACCACGATGGCATAGAGTTGGTGTTCCTGGCCCTGGACCAGGGCCACGCTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCAGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCCAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGTCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCCATTGCCCCTGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTCCATGTGTCTGGTGGGGCTCTTGGAGGAGGACGGATGGTTGAAGATTCATCGAGTGTTGCAGTGTTGGACACTGCTGCTGGAGTTTGGTGTGATACCAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCCTCAGTTGAGTTGACACGGCGTTGTAGGCATGCTGCTGCTGCTATTGGTGACTTAATTTTTATTTATGGTGGTTTACGTGGTGGGGTCTTGCTGGATGACCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACAACTGCTGCTTCACAAGCTGCAGCAGCAGCTGCATCTAATGTACAAGCTGGACGACTACCTGGACGGTATGGATTTGTTGATGATAGGACAAGGCAAACCATGCCTGAAGCAGCTCCTGATGGTTCAGTTGTTTTGGGAAATCCAGTTGCCCCCCCGGTAAATGGCGACGTATATACTGATATCAGTACAGAAAATGCCTTGCTCTCGGGATCTAGGCAAACGAGCAAAGGAGTTGAGTATCTAGTTGAAGCATCAGCTGCGGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCTAAGGCACGGCAAGTGAATGGTGAAGTTGAATTGCCTGATCGAGACCGTGGGGCTGAGGCAACACCTAGCGGGAAACAAATATCTTCCTTGATTAAGCCTGATTCTGCTGGGTCAAATAGCATTCCTCCTGGTGGAGTGAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAGAATGAAGGCAGGCGTGTCAGTTATGGGACTCCTGAAAGTGCAACAGCTGCTAGAAAATTATTAGACCGGCAGATGTCTATCAATAGTGTCCCAAAGAAGGTTGTAGCTCACCTTTTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTGGACTGCAATGAAATTGCAGATCTTTGTGATAGTGCAGAACGCATATTTTCAAGTGAACCGAGCGTCTTACAGCTAAGGGCTCCAATTAAAATATTTGGTGATTTACATGGGCAATTTGGAGATCTCATGCGCCTCTTTGATGAGTATGGTGCACCATCAACAGCTGGTGACATAGCATACATTGACTATCTATTCCTCGGAGATTATGTTGATAGGGGCCAACACAGCCTGGAAACTATTAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCAAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGGCATGGCACCGTATAAACCGTCTGTTTAATTGGCTTCCTCTGGCAGCACTAATAGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCACGTGGAACAAATTGAGAATATTCAGCGTCCGATTACGATGGAGGCAGGATCAATTGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGGCTGCGGCCAAATGCTAGGGGTCCAGGATTAGTTACTTTTGGGCCTGATCGTGTCATGGAATTTTGCAACAACAACGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGTTTTGAGCGTTTTGCCCAGGGACATTTGATCACACTTTTCTCTGCTACAAACTACTGCGGTACGGCAAATAATGCTGGGGCAATATTAGTTTTGGGTAGAGATCTCGTTGTGGTTCCTAAATTGATACATCCATTACCACCTGCAATTTCTTCACCGGAAACGTCACCGGAACGTCATATTGAGGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACTAGAGGGCGTCCTCAAGTACCAAATGACCGAGGTTCTCTTGCTTGGATATAG 2955 0.4951 MPRETSQETLRRRRWQADLRLSRRRNSSNSLPPATAAQVQQHSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVITNKWSRISPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLSSAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAIGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASQAAAAAASNVQAGRLPGRYGFVDDRTRQTMPEAAPDGSVVLGNPVAPPVNGDVYTDISTENALLSGSRQTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISSLIKPDSAGSNSIPPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVPNDRGSLAWI 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01246 984 SUPERFAMILY Kelch motif 125 415 IPR015915 GO:0005515
Pumo11g01246 984 PIRSF STPPP_BSU1 25 984 IPR012391 GO:0004721|GO:0009742
Pumo11g01246 984 Gene3D - 249 440 IPR015915 GO:0005515
Pumo11g01246 984 FunFam Serine/threonine-protein phosphatase 50 247 - -
Pumo11g01246 984 Gene3D - 41 248 IPR015915 GO:0005515
Pumo11g01246 984 Pfam Kelch motif 312 358 IPR011498 GO:0005515
Pumo11g01246 984 FunFam Serine/threonine-protein phosphatase 251 450 - -
Pumo11g01246 984 Pfam Calcineurin-like phosphoesterase 681 888 IPR004843 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 681 708 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 899 915 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 877 897 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 749 773 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 787 813 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 817 844 IPR006186 GO:0016787
Pumo11g01246 984 PRINTS Serine/threonine phosphatase family signature 716 743 IPR006186 GO:0016787
Pumo11g01246 984 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 25 984 - -
Pumo11g01246 984 MobiDBLite consensus disorder prediction 528 567 - -
Pumo11g01246 984 ProSitePatterns Serine/threonine specific protein phosphatases signature. 750 755 IPR006186 GO:0016787
Pumo11g01246 984 SUPERFAMILY Metallo-dependent phosphatases 639 944 IPR029052 -
Pumo11g01246 984 Gene3D - 617 956 IPR029052 -
Pumo11g01246 984 FunFam Serine/threonine-protein phosphatase 617 957 - -
Pumo11g01246 984 MobiDBLite consensus disorder prediction 960 984 - -
Pumo11g01246 984 MobiDBLite consensus disorder prediction 545 559 - -
Pumo11g01246 984 Pfam Galactose oxidase, central domain 206 259 - -
Pumo11g01246 984 SMART pp2a_7 653 937 IPR006186 GO:0016787
Pumo11g01246 984 MobiDBLite consensus disorder prediction 21 43 - -
Pumo11g01246 984 CDD MPP_Bsu1_C 633 935 IPR041758 -
Pumo11g01246 984 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01246 Pumo-Chr11 41970349 41984436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01246 645 880 Calmodulin-binding Proteins AT5G63870 29.044 1.00e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01246 - - gmx:100788485 1785.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01246 11 41970349 41984436 Pumo11g01246 11 41970349 41984436 ECH
Pumo4g03707 4 76755616 76766821 Pumo11g01246 11 41970349 41984436 PCT