Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01240 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAACAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTAATGGATTCTACTGA 558 0.4373 MSMEMMATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQHLSFEEPSSKELGSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKNLKLDGNKQEKLDQGEGAEKSNGFY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01240 185 CDD HMG-box_SF 113 149 - -
Pumo11g01240 185 FunFam axial regulator YABBY 5-like 97 155 - -
Pumo11g01240 185 SUPERFAMILY HMG-box 104 152 IPR036910 -
Pumo11g01240 185 Gene3D High mobility group box domain 97 155 IPR036910 -
Pumo11g01240 185 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
Pumo11g01240 185 Pfam YABBY protein 7 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01240 Pumo-Chr11 41888926 41896515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01240 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 64.398 3.16e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo11g01240 YABBY 3.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01240 K25796 - gmx:100500091 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03694 4 76542471 76552524 Pumo11g01240 11 41888926 41896515 PCT