Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01238 ATGAATAGTTTTGTGAAATACATTTTGGGTAATGGTTTGGTTGTATTGGTGGAAATAGTCAGGGTCACAAACACACTCGTTCAGCTTGGAGCAAAGTTTCTGTTCTCCCGCCTCAACGCACAAATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGCAACAATGCCGCTTCCTCCAAGCCTTCTTCCGATAAACCCTCGTCCGAGAAAACGGTGGCTGGAGGTCAGGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATTCGAACAAGCAAAAGGGGAAAGATGAGAAAGAAACACAGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACAGCAAGGAAATACTGGAGCCTAAGAAAATTCTTGAAGATGATGAAGATGACTCTGTCTTGCCTACTAATAAAAAGAAGTTAGCTGATACCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCAGAAATCTGCAGCCTTGGAAGAAAGTGACGAAGATGATGACAAAGATGCTGTGTCTGCTGCTAAATCTGGTGGAAGGGGTGGTGGTGGAAGAGCAGCACCAGGGCGATCAGCTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGGTTGTTTGATAAGATTCGTGCCTCAAAACCTGCAAAAGCTTCTTCACAAGAGAAGAAACCTGTGAATAAGGCTGTTGCCGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGTCCCTCTGTCCTCACGCTCACCTTCTAAGCAAGCCAAGTCGAAGACTGCTACTACTGTTCAGTCTTCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGTAATTGGTTGAAAGCTTGGAATGAGCAATTTTTGGACACTGGTAACAAAAAACAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCCAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGGCTATTGGGGTTAATATGGAACGGTCGAAGCATTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGAGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTAGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGCGGTTGATGGATGTTGCAAAGGCTGAAAAGCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTGCAGTATATGAGCCTCTCTATGTCAGTTATCAACTATGATGATGTTAGGCAGCGCTTTCTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGCTTTAATGCTGGGAAGATGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTCTCTTGCAACATGCATAATTCCTGCGTCATTGTTGCACGGGCAAAGGGAAATACTTGAACAGGGAGAACGGAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGAAAAAACTTGAGGCTTTTGGATGATCTTCACGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTCTTCTTAAACAAATGACAGAGCCCCTGCGAACCCTGCCTAAGGCTGAAGCAGTTCAGCAAGTTGTGGAATTGATGAATACATATTCTATCAGTCAGGAAGATTTTGATACTATAGTGGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCACATCTCGAGTTGTTCGAGTTGCAGATCTAATCACTCTTCCTGGAGTAAAGAAGGTCCCTAAGAAGCGTATTGCTGCTATTCTTGAACCAGCTGCTGACGAAGAAGTGGAAAAAGGTGAAGGTGATGCCTTGAACGAGAGTGAAGAAGAAAACAGTTCTGATACAGAAGAGTTGGAAGGCACTACCAAGGGCGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAGGCCACACAAGTACAGTTGGAACTGAAGGGTACGGGAAATTCAAGTTCCAAGAAGGCATCCGGTGGTAGAGGTAAAGGTGCTTCTTCATCTGGGCAGAAGGTTGCTCAAGCTCCAAAGACTACTGCAAAAAGAAAAAGGTGA 2955 0.4315 MNSFVKYILGNGLVVLVEIVRVTNTLVQLGAKFLFSRLNAQMSDIRKWFMKTHDKGNNAASSKPSSDKPSSEKTVAGGQESSGRRITSKYFNSNKQKGKDEKETQELPAKRKNMKDSKEILEPKKILEDDEDDSVLPTNKKKLADTTPTKKLKSGSGRGIPQKSAALEESDEDDDKDAVSAAKSGGRGGGGRAAPGRSAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDKIRASKPAKASSQEKKPVNKAVAVASQSKVSPKSQVKVPLSSRSPSKQAKSKTATTVQSSLMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWNEQFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGVNMERSKHSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEKLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRFLTNAKDEDISPFTAVDKLFGFNAGKMKMDERINLSMSDPDLVPLLIQENYINYRPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASSLATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKQMTEPLRTLPKAEAVQQVVELMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSTSRVVRVADLITLPGVKKVPKKRIAAILEPAADEEVEKGEGDALNESEEENSSDTEELEGTTKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASGGRGKGASSSGQKVAQAPKTTAKRKR 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01238 984 FunFam Replication factor C subunit 1 367 555 - -
Pumo11g01238 984 SUPERFAMILY BRCT domain 231 312 IPR036420 -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 312 361 - -
Pumo11g01238 984 FunFam Replication factor C subunit 1 207 310 - -
Pumo11g01238 984 CDD HLD_clamp_RFC 556 614 - -
Pumo11g01238 984 Gene3D BRCT domain 208 310 IPR036420 -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 94 148 - -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 894 984 - -
Pumo11g01238 984 SMART AAA_5 419 557 IPR003593 GO:0016887
Pumo11g01238 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 616 IPR027417 -
Pumo11g01238 984 Gene3D - 556 626 - -
Pumo11g01238 984 Pfam Replication factor RFC1 C terminal domain 696 858 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Pumo11g01238 984 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 57 956 - -
Pumo11g01238 984 SMART BRCT_7 233 311 IPR001357 -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 55 234 - -
Pumo11g01238 984 Gene3D - 367 555 IPR027417 -
Pumo11g01238 984 CDD BRCT_RFC1 231 309 - -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 330 361 - -
Pumo11g01238 984 Pfam BRCA1 C Terminus (BRCT) domain 233 306 IPR001357 -
Pumo11g01238 984 FunFam Replication factor C subunit 1 556 627 - -
Pumo11g01238 984 CDD AAA 420 519 - -
Pumo11g01238 984 PIRSF RFC1 49 959 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Pumo11g01238 984 SUPERFAMILY post-AAA+ oligomerization domain-like 627 772 IPR008921 GO:0003677|GO:0006260
Pumo11g01238 984 Gene3D - 628 737 - -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 215 230 - -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 926 975 - -
Pumo11g01238 984 ProSiteProfiles BRCT domain profile. 231 312 IPR001357 -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 900 916 - -
Pumo11g01238 984 Pfam ATPase family associated with various cellular activities (AAA) 423 522 IPR003959 GO:0005524|GO:0016887
Pumo11g01238 984 FunFam Replication factor C subunit 1 628 737 - -
Pumo11g01238 984 MobiDBLite consensus disorder prediction 55 93 - -
Pumo11g01238 984 Coils Coil 925 945 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01238 42 940 Core DNA Replication Machinery Family AT5G22010 68.226 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01238 K10754 - gmx:100790070 1583.54