Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01233 ATGTTCAACGGTATGATGGATCCCGATTTGATGAGAATCGCTCAGGAGCAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCATCGGAGAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGTTAAAGCATACCCGTCCGGAAGAAATGGCTGAGATTGGTGAGAAGATGGCTAATGCGAGCCCTGAAGAAGTGGCAGCGATGCGTTCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAACCAGGGAAATGAACTTCATAGTCAAGGAAGGTTCAATGATGCTTTGAGGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGCTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGAGGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTACTAAAAGATGCTGTTTCTGATCTGAGCATGGCACTTGAAGTGTCCCCTAATGATGATACAATTGCAGAGCTTTTACGGGATGCCAAGGAAAAATTGGCAAAGGAAGGTGGTGAGCATGCACCTGGAAGACTAGTAATTGAAGAAATAACTGACGAAGTTGAGGATGTGCCTTCTGGAAGCTCTTCTTTGGAACAAACAGTGGTTCAACCAAAGAAATCTGGCGACTCCTCTAAGAGTTACAGTACAGCTAACAATGGAAATCCAAAAACAAATGCAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTGAACGCTGGACAATTCAAAGACGTGTCTCCAGATATGATTAAAACTACCTCTGATATGGTTAGTAAAATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAACCCATTTTTTAGAGGAGGTTCCCCTGATTCATCTTTCAACCCTGGATCAATGCCTCCAAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCAGATGACCTTAAGAGGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTATTCCATTAGCAGCAGCAGATGAGAATGAAAGAAATGTTTCCCGGTCAAACTTACCATCATCAAGTACTAATGGAACTACTGCTTTTGGAGAATCAAGTTCTCATAATGTGTTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTACCGATATACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGTAAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCGGGAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAGCCTGGCATGATCCTTGCAATATGCATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1752 0.4235 MFNGMMDPDLMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPEEVAAMRSRVDAQIKYQLSAAEMLKNQGNELHSQGRFNDALRKYMLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYEAKNLKALYRRGQAYKELGLLKDAVSDLSMALEVSPNDDTIAELLRDAKEKLAKEGGEHAPGRLVIEEITDEVEDVPSGSSSLEQTVVQPKKSGDSSKSYSTANNGNPKTNADSLDALKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQKMLDMASSFQGDNPFFRGGSPDSSFNPGSMPPNVTPDMFKAASDMISKMPADDLKRMFEMASSLKGKESIPLAAADENERNVSRSNLPSSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSSTDIQEQMRNQMKDPAMRKMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAREAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMILAICMLILAVILHRLGFIGG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01233 583 MobiDBLite consensus disorder prediction 248 290 - -
Pumo11g01233 583 Gene3D Tetratricopeptide repeat domain 89 234 IPR011990 GO:0005515
Pumo11g01233 583 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Pumo11g01233 583 MobiDBLite consensus disorder prediction 426 449 - -
Pumo11g01233 583 MobiDBLite consensus disorder prediction 250 287 - -
Pumo11g01233 583 SMART tpr_5 180 213 IPR019734 GO:0005515
Pumo11g01233 583 SMART tpr_5 103 136 IPR019734 GO:0005515
Pumo11g01233 583 SMART tpr_5 146 179 IPR019734 GO:0005515
Pumo11g01233 583 SUPERFAMILY TPR-like 96 227 IPR011990 GO:0005515
Pumo11g01233 583 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 361 - -
Pumo11g01233 583 MobiDBLite consensus disorder prediction 424 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01233 Pumo-Chr11 41816270 41821350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01233 89 227 Calmodulin-binding Proteins AT3G25230 35.172 1.83e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01233 - - gmx:100800315 1073.92