Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01224 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCAATTGTTCTCAACTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGACGACACCACAGTTACCACCAAAGATGACACCATCCCTTTCCAAGTCAACCTTTGTTGTTCTCCAAACAATAATCATGTTTCTTCCCCATCATCTCTCCACAACAGAACCGAGATGGACTTCTTCTCCGACAAGAACACCAAAGATGACAACGTTGGCACTTCTGCCTCTGCCTCTCTCCCCGACAATGATCATCATTCCACCACTCCACCTACGTTGGATTTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACTAGCAGCGATCAATCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAAAAGAGCTAAGAATGAGCTGGCTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGGGACACGCTTGATGAGGTTAACACCAATTACAACGCGCTTCAGATGCATTTTATGAATCTGATGCAGGAGCGGAAGGGCGAGGAAGGTGAAGAGCAAGAAGTGTTTGGTGGAAATTTATGGATCTTGGGTTGGCTACTAATGCTAGCACTGAATGAACCCTCTTCTTCATCTGGGGTAAGAAGTCAAGATCGATCAGGATCACCCAACGTAGAAGTGGCTTCCAAGGAATTAGGGACTAGTAAGAATAATGCTAATGATGAAGGAGTTGTGTATGATCAAGAGAAGAAGGAGTATGGTAGAGGGGTTGAGAGAGAGGATAGTCCCTCAGGTCATGCTTTTGCTGGTGATAAAGTTCCAAGGTTCAGTCCTCCGAAGAATAATAATGTTGATCAGGCTGAGGCCACTATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCAATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATAGAACAGTCCTTATCACAACCTATGAAGGAAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGAATGTTGCTTTCTGGGTCAATGTCAAGTGCTGACAGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCAAGCATGGCCACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACTCAATCTCCAAACCCTCTACAGTTCCCAAGGCATCCAAACCAACTACAAATTGGTGTCCCTCAGAATTTTGCAAACTCCACAGCATCCTTAATGCCTCAGATATTTGGACAAGCACTCTACAACCAATCAAAGTTTTCTGGCCTACAAATGTCACATGATGCAGACCCTTCACAATTTGGTAACCACCCTCAGCAACAGGTTCCACCACACCTTGCTGACACAGTTGGTGCTGCCATTGCTACTGACCCAAACTTCACTGCAGCATTGGCAGCAGCTATCACTTCCATCATTGGTGGTGCTCAACAACACAACAACAACAGTAATAATAGTAACAATAATGGCAACATGACAGCCAGCAACAGCAATGGCAATGGCAACATGACAAGTAGTAGCAACAACAATAACTGCAACGGAAAGCAATAA 1773 0.4518 MVRGGGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLSPHNNMDDTTVTTKDDTIPFQVNLCCSPNNNHVSSPSSLHNRTEMDFFSDKNTKDDNVGTSASASLPDNDHHSTTPPTLDFKVNTGLNLLTTNTSSDQSMVDDEISPNSEDKRAKNELAVLQAELERMKRENQKLRDTLDEVNTNYNALQMHFMNLMQERKGEEGEEQEVFGGNLWILGWLLMLALNEPSSSSGVRSQDRSGSPNVEVASKELGTSKNNANDEGVVYDQEKKEYGRGVEREDSPSGHAFAGDKVPRFSPPKNNNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIGVPQNFANSTASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQQVPPHLADTVGAAIATDPNFTAALAAAITSIIGGAQQHNNNSNNSNNNGNMTASNSNGNGNMTSSSNNNNCNGKQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01224 590 MobiDBLite consensus disorder prediction 87 119 - -
Pumo11g01224 590 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo11g01224 590 MobiDBLite consensus disorder prediction 93 119 - -
Pumo11g01224 590 MobiDBLite consensus disorder prediction 229 262 - -
Pumo11g01224 590 MobiDBLite consensus disorder prediction 499 518 - -
Pumo11g01224 590 FunFam probable WRKY transcription factor 31 312 389 - -
Pumo11g01224 590 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 122 564 IPR044810 GO:0003700
Pumo11g01224 590 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo11g01224 590 Coils Coil 150 191 - -
Pumo11g01224 590 MobiDBLite consensus disorder prediction 553 590 - -
Pumo11g01224 590 Gene3D WRKY domain 312 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo11g01224 590 MobiDBLite consensus disorder prediction 229 302 - -
Pumo11g01224 590 MobiDBLite consensus disorder prediction 132 151 - -
Pumo11g01224 590 MobiDBLite consensus disorder prediction 263 286 - -
Pumo11g01224 590 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo11g01224 590 MobiDBLite consensus disorder prediction 499 519 - -
Pumo11g01224 590 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01224 Pumo-Chr11 41671170 41674202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01224 83 561 WRKY Transcription Factor Family AT1G62300 49.609 1.48e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo11g01224 WRKY 4.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01224 - - gmx:100797998 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01224 11 41671170 41674202 Pumo2g00341 2 5970661 5972138 ECH
Pumo11g01224 11 41671170 41674202 Pumo11g01224 11 41671170 41674202 ECH
Pumo4g03673 4 76277791 76280325 Pumo11g01224 11 41671170 41674202 PCT