Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01223 ATGGAGTGGCATAGAGGCCAAACCATAGGCCACGGCTCATCAGCCACCGTCTCTACCGCCACGTGCCGTGGCATCGGCATCTTTGCCGTCAAGTCATCGGAGCTGCAACAATCAGAGCCTCTAAAAAAGGAGCAAAAAATTTTGTCCTCTCTAAATAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAGCAACAAGCACATGTTCAACCTCTTCATGGAGTACATGCCTTTTGGCACACTTGCCCAGGCAACTCGCCAGTGCAATGGCCGGCTCGAGGAGTCGGCCATCGCACGCTACACGAGGCAAATTGTGCACGGGCTAGAGTACTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATTGGTGAAGATGGGGCCAAAATTGGAGACTTTGGGTGTGCCAAGAGTGTGACGGATTCCACGGCGGGGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGATTGAAATGGTAACTGGGGGTGCACCATGGCCTAATGTGAAAGACCCTTTTTCAGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTAAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAGGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAGTTATGTTTCAATAAGGAAGTTTTGGAATCTAATTCAAGTTCCCCAACTAGTATTCTTGAGCAAGGCTTTTGGAGTTCTGTGGAAGAGTCAGAGAGTTTAGGCAATTTGATTCACAAAACAAGAAATTTTGAAACTTTGGCTGCTGGGAGGGTCAGAATATTGGCTCTGTCTTCTGGGGTGCCCTGTTGGGCAAGACATGATGATGATGATGAGAATTGGATCACAGCAAGAGGGAATGGAGTTGAAGGTTTTGGCAATTGTGGGGCAGGGAGGGACAGCTTCTGCTAG 1050 0.4857 MEWHRGQTIGHGSSATVSTATCRGIGIFAVKSSELQQSEPLKKEQKILSSLNSPYVVAYKGCDITMESNKHMFNLFMEYMPFGTLAQATRQCNGRLEESAIARYTRQIVHGLEYLHSKGLVHCDIKGANILIGEDGAKIGDFGCAKSVTDSTAGIGGTPMFMAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVKDPFSVLYHIAYSSEVPEIPCFLSKEAKDFLGKCLRRNPQERWRASELLKHPFIEKLCFNKEVLESNSSSPTSILEQGFWSSVEESESLGNLIHKTRNFETLAAGRVRILALSSGVPCWARHDDDDENWITARGNGVEGFGNCGAGRDSFC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01223 349 CDD STKc_MAPKKK 2 252 - -
Pumo11g01223 349 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 289 - -
Pumo11g01223 349 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Pumo11g01223 349 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Pumo11g01223 349 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01223 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Pumo11g01223 349 FunFam Mitogen-activated protein kinase kinase kinase 17 2 304 - -
Pumo11g01223 349 Gene3D Transferase(Phosphotransferase) domain 1 1 255 - -
Pumo11g01223 349 Pfam Protein kinase domain 4 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01223 349 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01223 Pumo-Chr11 41627729 41629012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01223 1 333 MAP Kinase Kinase Kinase AT1G05100 51.009 3.06e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo11g01223 Pkinase 5.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01223 K20716 - gmx:100794648 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01223 11 41627729 41629012 Pumo2g00343 2 5988630 5993930 ECH
Pumo11g01223 11 41627729 41629012 Pumo11g01223 11 41627729 41629012 ECH
Pumo11g01223 11 41627729 41629012 Pumo4g00180 4 2197422 2199071 ECH
Pumo4g03671 4 76253941 76255234 Pumo11g01223 11 41627729 41629012 PCT