Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01199 ATGGTTATTTTGGGGAGAACACTGTTGCTCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGGTGGGGAGGAAAGAACCCTTTTCACCTACGAGTGTGAATTCCACTGTTTCTTCTAGACCGAAGGTTGTGAAGTTTGGTGCCCTCTTTACTATGAATTCTGTTATTGGAAGATCAGCTTTACCTGCAATTAAGGCTGCTGTTAAGGATGTTAATTCTAGCACGAGTATTCTCCCTGGCATTGATATGCAAGTTATTTTACATGATACTAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTTCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCATGTACCTCTTCTATCGTTTGGGGCAACTGACCCCACTCTATCTGCTCTACAATACCCATATTTTGTCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTATTACAGATGGAAGAAGGTAATTGCCATTTATGTAGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCAATGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGGGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATAATGGTGTAGCAATTTTCTCTCTTGCCAAGAGGCTAAGGATGATGGACAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTAGATCCACCTGACACTGACACAATGGATCTCTTGCAAGGGGTTGTGGCGTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAGTTTTCTCTCCAGGTTGAATAGCCAAAGAGACAATGAGACTGTGAGCTTCAACTCTTATGCACTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGCGCCCTTGATGCTTATCTCAATGAAGGTGGGAATATATCTTTCTCTAGTGACCCTAAGTTGCATGACACAAATGGAAGCATGTTGCAGTTGGGATCACTTCGTACCTTTGATGGTGGCCCGCAGTTTCTGCAGACAATTTTGAGCATGAACTTCACTGGTCTGAGTGGGCAAATTGAGTTTGACGTGGAGAAGAATTTAGTTCATCCAGCCTATGATATTCTGAACATTGGTGGTAGTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTGTCAGTTGTAGCTCCTGAAATTTTATATGAGAAAAAATCATCTAAGACTTCTTCAATGAGCAATCAAGAATTGTACAGTGTGATATGGCCAGGAGAGGTTACAACTACACCAAAGGGATGGGTGTTTCCCAACAATGGACAGCCATTGAGGATAGCAGTGCCGAACCGAGTGAGCTACAAGGATTTTGTTGCTAAAGACAAGAACCCCTCAGGGGTACATGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAACTTGTTGAGTTATCCGGTCCCACATCAATATATATTATATGGAGATGGTGAAAGGAATCCTAGCTACAACGAGCTTGTGGAGCAAGTTGCACAGAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTGTGGAGGAGAAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTCCTCAAATGTGGTTGGTCACTGCTGCTTTCTTTCTTTTCGTTGGGTCTGTTGTGTGGATTCTCGAGCACCGGCTCAATCCTGAGTTCCGTGGTTCACCGCGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACATAGGGAGAACACTGTGAGTGGACTTGGGCGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTTATCCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGATGACCTCAATATAGCTGAATCTAGGATAGTTACATTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGTGGTCCTAAAGGTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGAGGTCTTGATGTCCAGCACTGACTGTAAGTTCAGAACTGTTGGGCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATTTGTCAACTGCCATCCTTGAACTCTCTGAGAGTGGGGACCTGCAAAAGATTCATGACAAATGGCTCAATAAAAAGGAGCAGTGTGCAACCATTGATACCGATTCAAACAAACTAGCTCTCACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTATCATTGCCCTGATTATTTTCTTTGCTAGAATCTTCTGTCAATACAACAAATTCAGCCCAGAACCTGAGAAGATCGACGAGGAAATGCAACCAGTAAGGCCTAAACGTCCAAGCAGAACTCGTAGCATCAAGAAGTTGATGGTATTTGTAGATAGAAGAGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCATTGGATGA 2781 0.4265 MVILGRTLLLLVLCLWIPLEVVGRKEPFSPTSVNSTVSSRPKVVKFGALFTMNSVIGRSALPAIKAAVKDVNSSTSILPGIDMQVILHDTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHVISHVVNELHVPLLSFGATDPTLSALQYPYFVRTTQNDYFQMYAIADFVDYYRWKKVIAIYVDDDNGRNGISVLGDAMSKKRAKISYKAAFPPGATESDISDLLNEVNLMESRVYVLHVNPDNGVAIFSLAKRLRMMDSGYVWIATDWLPSVLDSLDPPDTDTMDLLQGVVAFRHHIPDTDLKKSFLSRLNSQRDNETVSFNSYALYAYDSVWLAARALDAYLNEGGNISFSSDPKLHDTNGSMLQLGSLRTFDGGPQFLQTILSMNFTGLSGQIEFDVEKNLVHPAYDILNIGGSGSRRIGYWSNHSGLSVVAPEILYEKKSSKTSSMSNQELYSVIWPGEVTTTPKGWVFPNNGQPLRIAVPNRVSYKDFVAKDKNPSGVHGYCIDVFEAALNLLSYPVPHQYILYGDGERNPSYNELVEQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPVEEKKSSPWSFLEPFTPQMWLVTAAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTYPIGIQDGSFARKYLIDDLNIAESRIVTLKNMEDYIDALQRGPKGGGVVAVVDELPYIEVLMSSTDCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILELSESGDLQKIHDKWLNKKEQCATIDTDSNKLALTSFWGLFLICGIACIIALIIFFARIFCQYNKFSPEPEKIDEEMQPVRPKRPSRTRSIKKLMVFVDRREAEVKEILRENKKRRHSIG 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01199 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 883 IPR015683 -
Pumo11g01199 926 Pfam Receptor family ligand binding region 61 416 IPR001828 -
Pumo11g01199 926 Gene3D - 159 432 - -
Pumo11g01199 926 SMART GluR_14 482 824 IPR001320 GO:0015276|GO:0016020
Pumo11g01199 926 Gene3D - 716 827 - -
Pumo11g01199 926 CDD PBP1_GABAb_receptor_plant 45 436 IPR044440 -
Pumo11g01199 926 Gene3D - 591 713 - -
Pumo11g01199 926 Pfam Bacterial extracellular solute-binding proteins, family 3 491 823 IPR001638 -
Pumo11g01199 926 FunFam Glutamate receptor 159 316 - -
Pumo11g01199 926 Gene3D - 476 590 - -
Pumo11g01199 926 SUPERFAMILY Periplasmic binding protein-like II 457 824 - -
Pumo11g01199 926 Gene3D - 63 407 - -
Pumo11g01199 926 Pfam Ligand-gated ion channel 824 854 IPR001320 GO:0015276|GO:0016020
Pumo11g01199 926 SUPERFAMILY Periplasmic binding protein-like I 39 473 IPR028082 -
Pumo11g01199 926 FunFam Glutamate receptor 718 826 - -
Pumo11g01199 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Pumo11g01199 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 330 342 - -
Pumo11g01199 926 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Pumo11g01199 926 FunFam Glutamate receptor 476 592 - -
Pumo11g01199 926 FunFam Glutamate receptor 592 722 - -
Pumo11g01199 926 CDD GluR_Plant 479 822 - -
Pumo11g01199 926 PIRSF IGluLR_plant 3 925 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01199 Pumo-Chr11 41355328 41361024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01199 40 789 Ion Channels AT1G05200 68.133 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01199 K05387 - gmx:100802782 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01199 11 41355328 41361024 Pumo11g01199 11 41355328 41361024 ECH
Pumo4g03657 4 75854113 75860360 Pumo11g01199 11 41355328 41361024 PCT
Pumo11g01199 11 41355328 41361024 Pumo4g03658 4 75866818 75872710 PCT