Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01194 ATGCAAGCCGGTATTATGATTCCGGCGAGAATCATGCCTTTGATGATAGCAAGGAACAACAACGTTGGTGGGTTTGGATCATCTTCACCTTTCACTCTTGCCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTTCCAAGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCACGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAGATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAACACGAACGGCATGAGAATACACAGCTTAGAACCGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAGGCTCTTAGCAATGCTTCAGTGTCCTAA 534 0.4888 MQAGIMIPARIMPLMIARNNNVGGFGSSSPFTLAQPNLMDALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASVS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01194 177 Gene3D - 72 162 - -
Pumo11g01194 177 SUPERFAMILY Homeodomain-like 75 144 IPR009057 -
Pumo11g01194 177 MobiDBLite consensus disorder prediction 45 96 - -
Pumo11g01194 177 MobiDBLite consensus disorder prediction 52 85 - -
Pumo11g01194 177 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Pumo11g01194 177 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Pumo11g01194 177 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Pumo11g01194 177 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Pumo11g01194 177 CDD homeodomain 87 145 IPR001356 GO:0003677
Pumo11g01194 177 MobiDBLite consensus disorder prediction 140 163 - -
Pumo11g01194 177 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 175 IPR042160 -
Pumo11g01194 177 SMART HOX_1 85 148 IPR001356 GO:0003677
Pumo11g01194 177 Coils Coil 150 170 - -
Pumo11g01194 177 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Pumo11g01194 177 Pfam Homeodomain 87 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01194 Pumo-Chr11 41312767 41314150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01194 56 176 Homeobox Transcription Factor Family AT1G05230 82.927 3.65e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo11g01194 Homeodomain 6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01194 K09338 - gmx:100782260 332.798