Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01188 ATGGCTGACATAGATCGCTCCTCTGATAATAATGTTTCTGCTGATTCTACTGAGAAATCAAGCGAAGTTTCAAATGATGAATTTTCTGAAGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAATATTGGACTTCAAGATACTCGACTAGCCAATGA 225 0.4 MADIDRSSDNNVSADSTEKSSEVSNDEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSTSQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01188 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Pumo11g01188 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 71 - -
Pumo11g01188 74 Gene3D - 27 69 - -
Pumo11g01188 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 74 IPR017930 -
Pumo11g01188 74 MobiDBLite consensus disorder prediction 1 27 - -
Pumo11g01188 74 FunFam MYB-like transcription factor 27 69 - -
Pumo11g01188 74 Pfam Myb-like DNA-binding domain 27 67 IPR001005 -
Pumo11g01188 74 SMART sant 24 72 IPR001005 -
Pumo11g01188 74 CDD SANT 27 66 IPR001005 -
Pumo11g01188 74 SUPERFAMILY Homeodomain-like 23 70 IPR009057 -
Pumo11g01188 74 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01188 Pumo-Chr11 41220199 41222765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01188 20 71 MYB Transcription Factor Family AT5G14750 46.154 8.00e-13 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g01188 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01188 - - gmx:778179 134.035