Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01174 ATGGCAAAGAAATCAAGCCAAGTTTCAAATGTTGAATTTTCAAAAGCTGAGGAAATCCTTATTGCCATGATGTATAATTTGGTTGGGGAGAGGTGGTCTTTGATTACTGGAAGAATTCCTGGAAGAACTGCAAAAGAGATAGAGACATATTGGACTTCAAGATACTCGAGTAGCCAATGA 180 0.3778 MAKKSSQVSNVEFSKAEEILIAMMYNLVGERWSLITGRIPGRTAKEIETYWTSRYSSSQ 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01174 59 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 8 56 - -
Pumo11g01174 59 SUPERFAMILY Homeodomain-like 10 55 IPR009057 -
Pumo11g01174 59 CDD SANT 12 51 IPR001005 -
Pumo11g01174 59 Gene3D - 12 54 - -
Pumo11g01174 59 Pfam Myb-like DNA-binding domain 12 52 IPR001005 -
Pumo11g01174 59 SMART sant 9 57 IPR001005 -
Pumo11g01174 59 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01174 Pumo-Chr11 40823734 40831921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01174 5 56 MYB Transcription Factor Family AT5G14750 42.308 1.25e-11 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g01174 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01174 - - gmx:778179 100.523