Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo11g01167 | ATGGATCATTACAAGGTTCTCGGCCTGCACCGAACCGCGACCAAGGACGAAATCAAAGCAGCATTCAAGAAACTAGCGTTCCAGTTCCACCCGGACAAGCATTCCCAATCGCCGAAGGCCGTTAGGGAAAACGCCACAATTCGATTCAAGCAGGTCTCCGAGGCCTACGAGATTCTGATGGACGATCGCAAGCGCGCCGACTACAATTTCCGGCGGAGCTCCGGCGCCGGCGCCGGAAACAACTACTATTCTCAGTATAGCTACGGATACGGTAGGAGTGGGAACAGTTATTACGAGTATAAACCTAGGTCTGGTGGTGGTGGTGGTGGCGGCTTCGCGTCCAAGTTTGAACTCGCGCTTCGGATTTTGACCGCGCGGTCTTCGCTTCTCAGTCTCGGCTTCGCAGCGGCTATATTAGGTGGGATAGTTGTCATTGATTCAAGTGGAGAGTCTTTATGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATCGAGAAAGCCAAAGCATATAGAGAAGATAACATGAAGGAACGCCCTTGA | 555 | 0.5099 | MDHYKVLGLHRTATKDEIKAAFKKLAFQFHPDKHSQSPKAVRENATIRFKQVSEAYEILMDDRKRADYNFRRSSGAGAGNNYYSQYSYGYGRSGNSYYEYKPRSGGGGGGGFASKFELALRILTARSSLLSLGFAAAILGGIVVIDSSGESLWRMQNSGKSFEEAMKSIEKAKAYREDNMKERP | 184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo11g01167 | 184 | CDD | DnaJ | 2 | 61 | IPR001623 | - | |
| Pumo11g01167 | 184 | FunFam | DnaJ domain protein | 1 | 90 | - | - | |
| Pumo11g01167 | 184 | PRINTS | DnaJ domain signature | 4 | 22 | IPR001623 | - | |
| Pumo11g01167 | 184 | PRINTS | DnaJ domain signature | 44 | 64 | IPR001623 | - | |
| Pumo11g01167 | 184 | PRINTS | DnaJ domain signature | 22 | 37 | IPR001623 | - | |
| Pumo11g01167 | 184 | SMART | dnaj_3 | 1 | 64 | IPR001623 | - | |
| Pumo11g01167 | 184 | ProSitePatterns | Nt-dnaJ domain signature. | 49 | 68 | IPR018253 | - | |
| Pumo11g01167 | 184 | Pfam | DnaJ domain | 2 | 69 | IPR001623 | - | |
| Pumo11g01167 | 184 | SUPERFAMILY | Chaperone J-domain | 1 | 97 | IPR036869 | - | |
| Pumo11g01167 | 184 | ProSiteProfiles | dnaJ domain profile. | 2 | 72 | IPR001623 | - | |
| Pumo11g01167 | 184 | PANTHER | CO-CHAPERONE PROTEIN DJLA | 4 | 113 | - | - | |
| Pumo11g01167 | 184 | Gene3D | DnaJ domain | 1 | 91 | IPR036869 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo11g01167 | Pumo-Chr11 | 40532668 | 40537657 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo11g01167 | 3 | 73 | C2H2 Transcription Factor Family | AT1G74250 | 39.437 | 4.12e-12 | 62.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo11g01167 | - | - | gmx:100782769 | 310.842 |