Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01163 ATGCTCATGTTAGTGAAAAACCACAATAAAGGGGATGGATCAAAGTCCCTGGCCGATACACTGGCGAGATGGAAAGAATATAATGCCCAGCTCGAGTCTAGCAATGAGGCCGAGAAGCCGGTTAGGAAGGTTCCTGCCAAGGGATCAAAGAAGGGGTGTATGAAAGGCAAAGGAGGGCCTGAGAACTCGCGCTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGGGAACCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTCCCACTGCCATTAGCGCTGCTCTTGCTTATGATGAAGCAGCAAGGGCAATGTATGGTTCCTGTGCACGCCTCAACTTCCCCAATGTTCAAGTTTCAACTTTATCTGAGGAATCGTCGAGAAATTCTCCACCTGCTAATCAGTCAAGAAATTCTCTGGCTGCTAATCAATCTGGTTCTGCGTTCATGATATTAGAGAGTTCTGAGTGCAGGATATTGCCGAACAACTCTGGGGGAGGCGCAGCAGAGGATGATGACATGGAAGACCTTTCCTTATCCTTAAGTGTGAAACGTGTGAAACATGAGGAAGGGGAGGATGAATCAGGGACCGGTTCTTCCTATCTTTCATTGTCTTGA 642 0.4798 MLMLVKNHNKGDGSKSLADTLARWKEYNAQLESSNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAARAMYGSCARLNFPNVQVSTLSEESSRNSPPANQSRNSLAANQSGSAFMILESSECRILPNNSGGGAAEDDDMEDLSLSLSVKRVKHEEGEDESGTGSSYLSLS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01163 213 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 MobiDBLite consensus disorder prediction 185 203 - -
Pumo11g01163 213 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Pumo11g01163 213 MobiDBLite consensus disorder prediction 170 213 - -
Pumo11g01163 213 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Pumo11g01163 213 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Pumo11g01163 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 152 - -
Pumo11g01163 213 MobiDBLite consensus disorder prediction 33 61 - -
Pumo11g01163 213 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01163 Pumo-Chr11 40408138 40410453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01163 4 123 AP2-EREBP Transcription Factor Family AT2G40350 58.871 2.07e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo11g01163 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01163 - - gmx:100783729 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03620 4 75140336 75142142 Pumo11g01163 11 40408138 40410453 PCT