Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01156 ATGAAGAAGTGCGAACTGTGCAAGGTTCCGGCGAGGATCTTCTGCGAGTCGGACCAGGCAAGCTTATGCTGGGACTGCGACGCGAAGGTTCACAGCGCCAACTTCTTGGTCGCGAGGCACTCCCGAACCCTACTCTGCCGCACGTGCCTCTCTCCCACGCCGTGGAAGGCCTCCGGCGCCACACTCGCCAGCGCCGCCTCCGTATGCGACCGCTGCGCCGCCGCGGATGAACCGGAGGAGAGCGAAGCCGGCAATGACGAGGAGCCAGACACCGAGGACGACGATAACGACGATGTCGCCGGCGACGAGGACGGCGACAACCAGGTCGTGCCGTGGTCCTCCACGCCGCCTCCTCCGCCGGCGAGCTCCTCCGGCAGCGAGTGGTCGGAGTGCAAAAACGACGACGACAACGAAGACGCTTCTGTTTCCGCCTCCGAACCGGAAACGACAACGTCCACGTTGAAACGACAGCGCGAGGACGATGATGATGCTGCTTCCGATCTTGATCCGCAGGGGGGTCAGAAGGGTTGCGCGTCTCAACGGAGGTGGCGTGTGACGGAGAATCGTCGTTGA 573 0.637 MKKCELCKVPARIFCESDQASLCWDCDAKVHSANFLVARHSRTLLCRTCLSPTPWKASGATLASAASVCDRCAAADEPEESEAGNDEEPDTEDDDNDDVAGDEDGDNQVVPWSSTPPPPPASSSGSEWSECKNDDDNEDASVSASEPETTTSTLKRQREDDDDAASDLDPQGGQKGCASQRRWRVTENRR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01156 190 MobiDBLite consensus disorder prediction 73 190 - -
Pumo11g01156 190 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Pumo11g01156 190 CDD Bbox1_BBX-like 3 45 - -
Pumo11g01156 190 MobiDBLite consensus disorder prediction 79 104 - -
Pumo11g01156 190 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 169 - -
Pumo11g01156 190 SMART bboxneu5 1 45 IPR000315 GO:0008270
Pumo11g01156 190 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01156 Pumo-Chr11 40300544 40301764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01156 2 105 C2C2-CO-like Transcription Factor Family AT5G54470 54.286 2.03e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo11g01156 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01156 - - gmx:100782655 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01156 11 40300544 40301764 Pumo11g01156 11 40300544 40301764 ECH
Pumo4g03607 4 74941999 74943479 Pumo11g01156 11 40300544 40301764 PCT