Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01146 ATGGTGAGAACCCCGAGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTACATTACCAGATATGGCCACTGGAATTGGCGACTACTTCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTATCTAAGGCCAAACCTCAAAAGAGGGAACTATACTGAAGAGGAGGAGGAAACTATTATCAAGCTGCATCGACATCTGGGTAACAGATGGTCTGCCATAGCTGCACGGATGCCAGGAAGAACAGACAACGAAATAAAAAATCATTGGCACACAAACCTCAAAAAGAGGTCTCAACAGGACTCAGCCACAGAAGAAACTCAGGTCTCAAACTCAAATAATGACCAATCCCCAACTGAACCAACTGCAAATACTTTCCAAAGCTTTCACCACACCACGCAAGATTGTTCCCCACTTTCCCAGCACTCATCATCCTCCACCAGCACCACTGTCACCAGCAACGATGAAAATCTGGTGCTGGAAGATGAATTTGCCTTTTGGGATGCAGACACGGATCTTATGAGTGGGAATTTCTGGCTAGAACCCTATATGCTTGATATTTCCGACGAAGCCGGGTACTTTAGCCAAGTGTTTGATGTAGAACTTTGGAGCCATGATAACTGA 678 0.4543 MVRTPSCDKNGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRHLGNRWSAIAARMPGRTDNEIKNHWHTNLKKRSQQDSATEETQVSNSNNDQSPTEPTANTFQSFHHTTQDCSPLSQHSSSSTSTTVTSNDENLVLEDEFAFWDADTDLMSGNFWLEPYMLDISDEAGYFSQVFDVELWSHDN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01146 225 MobiDBLite consensus disorder prediction 100 172 - -
Pumo11g01146 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 177 - -
Pumo11g01146 225 CDD SANT 16 61 IPR001005 -
Pumo11g01146 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g01146 225 SMART sant 13 63 IPR001005 -
Pumo11g01146 225 SMART sant 66 114 IPR001005 -
Pumo11g01146 225 MobiDBLite consensus disorder prediction 121 172 - -
Pumo11g01146 225 FunFam Transcription factor MYB14 69 143 - -
Pumo11g01146 225 MobiDBLite consensus disorder prediction 100 120 - -
Pumo11g01146 225 FunFam MYB-related transcription factor 13 66 - -
Pumo11g01146 225 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g01146 225 Gene3D - 13 66 - -
Pumo11g01146 225 Gene3D - 68 141 - -
Pumo11g01146 225 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo11g01146 225 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g01146 225 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g01146 225 CDD SANT 80 112 IPR001005 -
Pumo11g01146 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g01146 225 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01146 Pumo-Chr11 40158938 40162272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01146 1 208 MYB Transcription Factor Family AT2G31180 46.635 9.09e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01146 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01146 K09422 - gmx:100777621 385.571