Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01145 ATGGTGAGAACTCCGTCTTGTGATAAAAGTGGAATGAGGAAAGGTACTTGGACTCCGGAGGAAGATTTGAAGTTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCTAACCTCAAAAAAGGGAACTTCACTCAACAAGAAGAAGAATGCATCATCAGAATGCACAAGAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACACTCAAGAAGAGGTCTCAACAAAACACACTCACAAATGAAGAAGCTGCCAGAGCCTCCAAATCAAAGGATAAGGTTCCCAACAAAGGTGTAACTGTTACTCTTCCAGCTGCTTCCCAGATTTCAGATAATTCATGTTTATCGGCAGTTTCATCCACCTGCAGCGAGTTTTCCTCCGTAACTTCAGATCATTCCACTGCTGCTAGTATGGAAAATTTGGTGTTTGAAGATGACTTTGGTTTTCTGAATTCATACAATGAAAGTTTCTGGACAGAGCTAAATCTGGATGACATTTCTTTCAATGCATCATGTGAAATAGTTTCCGGAGATACTAATGGCTCTTTTCAAAGTACAGATGCTAGCCAGATCCATGATTCTTGTGCATTGTCTCCACATGGGTCAACTAGCGAAAGTATTGTTGTGGATAATGACTTTGGCGGCTTTCTCGATGCATACGCGGAGGCAACTGTTGATAACTTCTGGACACAGCCATATGTGGCTGACATGTCCCACGTTCCCTCTGTGGCAGAATCTGAATATTTTACTCCAATATATGATGATCTGTGGGGTCAAAGTCATTTGTATTAG 918 0.4205 MVRTPSCDKSGMRKGTWTPEEDLKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKKGNFTQQEEECIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSQQNTLTNEEAARASKSKDKVPNKGVTVTLPAASQISDNSCLSAVSSTCSEFSSVTSDHSTAASMENLVFEDDFGFLNSYNESFWTELNLDDISFNASCEIVSGDTNGSFQSTDASQIHDSCALSPHGSTSESIVVDNDFGGFLDAYAEATVDNFWTQPYVADMSHVPSVAESEYFTPIYDDLWGQSHLY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01145 305 SMART sant 13 63 IPR001005 -
Pumo11g01145 305 SMART sant 66 114 IPR001005 -
Pumo11g01145 305 CDD SANT 69 112 IPR001005 -
Pumo11g01145 305 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo11g01145 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g01145 305 CDD SANT 16 61 IPR001005 -
Pumo11g01145 305 Gene3D - 68 140 - -
Pumo11g01145 305 FunFam MYB-related transcription factor 13 66 - -
Pumo11g01145 305 FunFam Transcription factor MYB14 69 143 - -
Pumo11g01145 305 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g01145 305 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g01145 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g01145 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g01145 305 Gene3D - 14 66 - -
Pumo11g01145 305 MobiDBLite consensus disorder prediction 112 138 - -
Pumo11g01145 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g01145 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01145 Pumo-Chr11 40145951 40147327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01145 1 250 MYB Transcription Factor Family AT1G06180 42.857 4.69e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01145 Myb_DNA-binding 6.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01145 K09422 - gmx:778184 506.138