Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01144 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTCCGGAGGAAGATATGAAGTTAAGTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCTAACCTCAAAAGAGGGAACTTCACTCAACAAGAAGAAGAATGCATCATCAGAATGCACAAGAAACTTGGTAACAGATGGTCTGCTATTGCGTCTGAGTTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACACTCAAGAAGAGGTCTCAACAAAACACACTCACAAATGAAGAAGCTGCCAGAGCCTCCAAATCAAAGGATAAGGTTCCCAACAAAGGTGTAACTGTTACTCTTCCAGCTACTTCCCAGATCCCAGACAATTCATCAGGCTCATTATCGCCACTTTCATCCTCCAGCAGCGAGTTTTCCTCCATAACATCTGCTAGTGTGGAAAATTTGGTGTTTGAAGATGACTTTGCTTTTCTGGATTCATACAATGAAAGTTTCTGGACAGAACTAAATCTGGACGACATTTCCTTCAATGCATCATGTGAAATAGTGTCGGGAGATACTAATGGCTCTTTTCAAAGTACAGATGCTAACCAGATCCATGATTCTTGTGCAATGTCTCCACACCAGTCAACCAGAGAAAGTATGGTTGTGGATAATGACTTTGGTCGCTTTCTCGATGCATACGCGGAGGCAACAGTTGATAACTTTTGGACACAGCCATATGTGGCTGACATGTCCCACGTTCCAACCGAACTACTTGTTCCCTCCCTGGTAGAATCTGAATATTTTACTCCAATATATGATGATCTGTGGGGTCAAAGTCATTTGTATTAG 927 0.4272 MVRTPSCDKSGMRKGTWTPEEDMKLSAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTQQEEECIIRMHKKLGNRWSAIASELPGRTDNEIKNHWHTTLKKRSQQNTLTNEEAARASKSKDKVPNKGVTVTLPATSQIPDNSSGSLSPLSSSSSEFSSITSASVENLVFEDDFAFLDSYNESFWTELNLDDISFNASCEIVSGDTNGSFQSTDANQIHDSCAMSPHQSTRESMVVDNDFGRFLDAYAEATVDNFWTQPYVADMSHVPTELLVPSLVESEYFTPIYDDLWGQSHLY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01144 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g01144 308 FunFam MYB-related transcription factor 13 66 - -
Pumo11g01144 308 CDD SANT 69 112 IPR001005 -
Pumo11g01144 308 MobiDBLite consensus disorder prediction 111 163 - -
Pumo11g01144 308 CDD SANT 16 61 IPR001005 -
Pumo11g01144 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g01144 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo11g01144 308 Gene3D - 14 66 - -
Pumo11g01144 308 MobiDBLite consensus disorder prediction 142 163 - -
Pumo11g01144 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g01144 308 FunFam Transcription factor MYB14 69 143 - -
Pumo11g01144 308 SMART sant 13 63 IPR001005 -
Pumo11g01144 308 SMART sant 66 114 IPR001005 -
Pumo11g01144 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g01144 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g01144 308 Gene3D - 69 140 - -
Pumo11g01144 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g01144 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01144 Pumo-Chr11 40126026 40127394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01144 1 200 MYB Transcription Factor Family AT2G31180 48.309 2.71e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01144 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01144 K09422 - gmx:100777107 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03597 4 74811439 74814664 Pumo11g01144 11 40126026 40127394 PCT
Pumo11g01144 11 40126026 40127394 Pumo4g03596 4 74795181 74796695 PCT