Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01143 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTCCGGAGGAAGATAGAAAGTTAATTGCTTATGTTACTAGATATGGCTCCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACGTCAAAAGAGGGAACTTCACTCAACAAGAAGAAGAATGCATCATCAGAATGCACAAAAACCTTGGCAACAAATGGTCTGCTATTGCGGCTGGGTTACCTGGAAGAACAGATAACGAGATAAAAAACCATTGGCACACCACACTCAAGAAGAGGTCTCAACAAAACACACTCACAAATGAAGAAGCTGCCAGAGCCTCCAAATCAAAGGATAAGGTTCCCAACAAAGGTGTAACTGTTACTCTTCCAGCTACTTCCCAGATTTCAGATAATTCATCATTATCGCCAGTTTCATCCACCTGCAGCGAGTTTTCCTCCATAACTTCAGATCATTCCACTGCTGCTGCCAGCATGGAAAATTTGGTGTTTGAAGATGACTTTGGTTTTCTGGATTCATACAATGAAAGTTTCTGGACAGAGCTAAATCTGGATGACATTTCCTTCAATGCATCATGTGAGATAGTTTCAGGAGATACTAATGGCTCTTTTCAAAGTAAAGATTCTAGCCAGATCCATGATTCTTGTGCATTGTCTCCGCATGGGTCGTCAACCAGCGAAAGCATGGTTTTGGATAATGACTTTGGCGGCTTTCTCGATGCATACGCGGAGGCAACAGTTGATAACTTCTGGACACAGCCATATGTGGCAGTGGCTGACATGTCCCACGTTCCCTCTGTGGCAGAATCTGAATATTTTACTCCAATATATGATGATCTCTGGGTTTAA 915 0.4306 MVRTPSCDKSGMRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTQQEEECIIRMHKNLGNKWSAIAAGLPGRTDNEIKNHWHTTLKKRSQQNTLTNEEAARASKSKDKVPNKGVTVTLPATSQISDNSSLSPVSSTCSEFSSITSDHSTAAASMENLVFEDDFGFLDSYNESFWTELNLDDISFNASCEIVSGDTNGSFQSKDSSQIHDSCALSPHGSSTSESMVLDNDFGGFLDAYAEATVDNFWTQPYVAVADMSHVPSVAESEYFTPIYDDLWV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01143 304 FunFam Transcription factor MYB14 69 143 - -
Pumo11g01143 304 CDD SANT 69 112 IPR001005 -
Pumo11g01143 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo11g01143 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo11g01143 304 MobiDBLite consensus disorder prediction 112 140 - -
Pumo11g01143 304 CDD SANT 16 61 IPR001005 -
Pumo11g01143 304 Gene3D - 68 140 - -
Pumo11g01143 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Pumo11g01143 304 FunFam MYB-related transcription factor 13 66 - -
Pumo11g01143 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo11g01143 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo11g01143 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo11g01143 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo11g01143 304 Gene3D - 6 67 - -
Pumo11g01143 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo11g01143 304 SMART sant 66 114 IPR001005 -
Pumo11g01143 304 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01143 Pumo-Chr11 40090925 40092082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01143 1 204 MYB Transcription Factor Family AT2G31180 50.490 3.56e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01143 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01143 K09422 - gmx:778184 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03596 4 74795181 74796695 Pumo11g01143 11 40090925 40092082 PCT