Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01141 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAACCTTCACTCTGATGCATTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACAGAATCACTCTCACACTCTCAAAGCCAGAGATCTTGACATCTCTGTCAGAAGAGAACTCATTTCCTTAATCTCACAGTTGTCCTGTACTTTGGATCCGGTTGTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTAGCCAACCAAGAAATTTTGCAACCAAAGCCATGGGCCCTTAGGCTCATTGCTGTTTCTTGCATTTCTCTAGCTGTCAAGATGATGAGAAATGAATACCCTGCCACTGATGTCCAGGCCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTTATCTTGGGAGCATTACAATGGAGAATGAGATCGATCACCCCATTCTCTTTCGTAGCTTTCTTCATTACTTTGATGGGGCTCAAAGACTCACCAATGGGGCAGGTTCTGAAAAACCGTGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAGACTTTGGGAATTCAAGCCATCTATAATTGCTGCATCTGCCCTTCTGTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTCCTTCTTAGTTGCAATATCCGATTCTTCATATGTAAATAAAGAAAGCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAAGAGTACTCTTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGCAAGCGAAAAAACCAACGGAATCACCGTTGCTGATTCTCCTCTGAGGGACCTTAAAAGAAGGAAAATAATCACTGGTTGTGGAAACAACAACAATCCAACGATCCACAATTCTTGGATTAAACCATGCGAAAGAGAGTAA 963 0.4226 MEFDLENPLENLHSDAFSYLFLIESDHTPSQNHSHTLKARDLDISVRRELISLISQLSCTLDPVVSYLAINYLDRFLANQEILQPKPWALRLIAVSCISLAVKMMRNEYPATDVQALLNQSDGGIIFETQTIQRMEALILGALQWRMRSITPFSFVAFFITLMGLKDSPMGQVLKNRASEIIFKSQREIRLWEFKPSIIAASALLCASHELFPFQYPSFLVAISDSSYVNKESVEQCYKVIQDIAIEEEYSSALNGVSRSDTPINVLDHHFLSSASEKTNGITVADSPLRDLKRRKIITGCGNNNNPTIHNSWIKPCERE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01141 320 Pfam Cyclin, C-terminal domain 150 249 IPR004367 -
Pumo11g01141 320 Gene3D - 30 148 - -
Pumo11g01141 320 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Pumo11g01141 320 Gene3D - 20 239 - -
Pumo11g01141 320 FunFam D6-type cyclin 145 239 - -
Pumo11g01141 320 SUPERFAMILY Cyclin-like 132 246 IPR036915 -
Pumo11g01141 320 CDD CYCLIN_AtCycD-like_rpt2 150 241 - -
Pumo11g01141 320 PANTHER CYCLINS 13 252 IPR039361 -
Pumo11g01141 320 SMART cyclin_7 48 141 IPR013763 -
Pumo11g01141 320 SMART Cyclin_C_2 150 263 IPR004367 -
Pumo11g01141 320 SUPERFAMILY Cyclin-like 12 147 IPR036915 -
Pumo11g01141 320 FunFam D6-type cyclin 30 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01141 Pumo-Chr11 40020966 40023431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01141 1 299 Core Cell Cycle Gene Families AT4G03270 43.671 5.33e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01141 K18812 - gmx:100783875 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01141 11 40020966 40023431 Pumo11g01141 11 40020966 40023431 ECH
Pumo4g03595 4 74782102 74784566 Pumo11g01141 11 40020966 40023431 PCT