Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01101 ATGGCAAACAATAGTGGAAAGTCTAGCAAGGAGGGTGTTGATGAGACTCATCACAAGGTGATTGATGAAAGTGAAAGCCAAGATTGGGAGAAAGAGAAGGGAAAGGGTCTGGATTTGAGCTCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCTGTGTCACAAAGGCCTCTCAAGAAAATTCGCAGCCCTGAACGCGAAAATCCAAATCAACAACAACCATCCTCTATGCTATCTCTTCAACCTCCTTCATCAAGAATAGTGTTTCCTTTTGCTTTTGAAGGGTCTCAACATCCAATGCCATTCCCACACCCATTTGGAACCACAAACTTGCCTCTTTTTCGTCCACCTCTTCAGCCAACGCAACAAATGATATCTTTTGGACCCCAACAGAACATGGGGTATCCACCATTCCTAGCCCCAGATTCTACCATGCCACACCAACACCAACAACAGGTCCAACAGCATCATCAACAGCAGCAACAGCTTCTTCAGTATTGGAGTGATGCACTGAATTTGAGTCCAAGAGGGAGAATGATGATGATGATGAATAGGACTGAAGGGAGACCAATGTTAAGGCCCCAAGCACAGCCTTTGAATGCTACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATCGAACTCGCCTCTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCTATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAGAATGCTAAGCTCAATTTCCCTGAACTCTTTCTCAACAAGGATAAAGCAGAACCATCCACAACTGCTCCTGCTTCTTCTTCAAATGAAGGTTCAACATCAACATCAAGCCAGAACACAAAGCAACCTGAACCAGTTCCAGAAGAGACCAACACTGAGAGTGAGGACATGCCACCAACTGGGACATTAGCAGAAGAGAATGCTGAAACTGGGGAAGGAGTTTCACAGCCTCAGGAATTGGTTTGGGGTGAATGGTTCAATGCAATTCCTGCAGGTTGGGGACCTGGAAGTCCTGTGTGGGATGACTTAGACCCCAACAATAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCCAAATCAGCAAGAGTTCAATGATGCTAGTGCTTCTTCTGCTCAGACACAACAAGATAACAACACAGAACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCTTTCTTCTGA 1236 0.4612 MANNSGKSSKEGVDETHHKVIDESESQDWEKEKGKGLDLSSGRRQWKPVFDDASVSQRPLKKIRSPERENPNQQQPSSMLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTNLPLFRPPLQPTQQMISFGPQQNMGYPPFLAPDSTMPHQHQQQVQQHHQQQQQLLQYWSDALNLSPRGRMMMMMNRTEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTTAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTGTLAEENAETGEGVSQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFNDASASSAQTQQDNNTEPGSSSPSCPMRPFF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01101 411 MobiDBLite consensus disorder prediction 69 85 - -
Pumo11g01101 411 SUPERFAMILY DNA-binding domain 206 264 IPR016177 GO:0003677
Pumo11g01101 411 PRINTS Ethylene responsive element binding protein signature 229 245 IPR001471 GO:0003700|GO:0006355
Pumo11g01101 411 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700|GO:0006355
Pumo11g01101 411 ProSiteProfiles AP2/ERF domain profile. 206 263 IPR001471 GO:0003700|GO:0006355
Pumo11g01101 411 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 25 358 - -
Pumo11g01101 411 MobiDBLite consensus disorder prediction 274 313 - -
Pumo11g01101 411 FunFam Ethylene-responsive transcription factor 2 205 264 - -
Pumo11g01101 411 MobiDBLite consensus disorder prediction 374 411 - -
Pumo11g01101 411 MobiDBLite consensus disorder prediction 1 85 - -
Pumo11g01101 411 SMART rav1_2 206 269 IPR001471 GO:0003700|GO:0006355
Pumo11g01101 411 MobiDBLite consensus disorder prediction 374 403 - -
Pumo11g01101 411 Gene3D AP2/ERF domain 206 264 IPR036955 GO:0003700|GO:0006355
Pumo11g01101 411 CDD AP2 205 265 IPR001471 GO:0003700|GO:0006355
Pumo11g01101 411 MobiDBLite consensus disorder prediction 10 40 - -
Pumo11g01101 411 MobiDBLite consensus disorder prediction 270 330 - -
Pumo11g01101 411 Pfam AP2 domain 207 255 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01101 Pumo-Chr11 39403129 39404364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01101 2 357 AP2-EREBP Transcription Factor Family AT2G20880 46.721 6.00e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo11g01101 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01101 - - gmx:100811328 696.041