Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01078 ATGGCCTTAAATCACTTTGAGGAGACTGTGCCCCAAAAAGAAAAGTGGAAATCTTCCAGTGAAATCATTGCAGATTCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTTTCAAAGCACCTCTGTGGATAATGAAGAGCAACAGGAGCCACAATGTCCTGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCACTATATGGCCGTGGTCAAACCACAATACCTTCTAAAGGGAAGCCACATCAAGTAGGGACTACTGTCATACCACAAAGACCTCATGGTCCAAGAACATTGAACACTAGAAGTGTTTCCCAACCTGTTTCTCAAAGTTATCATCCCTATAGTAATCCTTATCATCCTCCACAATTCAACTCAATTCCAAGCGGTTACACCTCACCAATGATTAGAACAAGTGGTTCACTAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCAGGTGTCAAACATTCATACATACGCCAATTCGTACAATCTTTCAGGGACCAGTAACCCAAGGATGAGAAGACACTTGATGCAAGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTTCTGTTATTCTGA 723 0.4205 MALNHFEETVPQKEKWKSSSEIIADSDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSVDNEEQQEPQCPVCKSEVSQSSLVPLYGRGQTTIPSKGKPHQVGTTVIPQRPHGPRTLNTRSVSQPVSQSYHPYSNPYHPPQFNSIPSGYTSPMIRTSGSLDNTFGIFGEMIYARVFGNQVSNIHTYANSYNLSGTSNPRMRRHLMQVDKSLSRISCFLLCCLVLCLLLF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01078 240 MobiDBLite consensus disorder prediction 122 137 - -
Pumo11g01078 240 MobiDBLite consensus disorder prediction 101 137 - -
Pumo11g01078 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Pumo11g01078 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Pumo11g01078 240 SMART ring_2 36 84 IPR001841 -
Pumo11g01078 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo11g01078 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Pumo11g01078 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 100 IPR013083 -
Pumo11g01078 240 FunFam E3 ubiquitin-protein ligase RMA1H1 6 105 - -
Pumo11g01078 240 CDD RING-HC_AtRMA-like 34 86 - -
Pumo11g01078 240 SUPERFAMILY RING/U-box 33 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01078 Pumo-Chr11 38940483 38943888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01078 21 240 C3H Transcription Factor Family AT4G28270 41.048 4.98e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01078 K10666 - gmx:100786373 434.106