LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01069	ATGGGTTGCTTATGTTCTAAGAGTTCGGCTGTAGAGGACAGCAAGGAAGGTGTCACTAAGAAATATCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGATGGTGGTCATGTGAAAGGTTCATTGGTTGACAAGAAGGCCAATGGTTCAGGGCAGTTGTATGGTGATCATGATGTGAAGAAGAAACTAGAGAAGCCGGAATTGACTGTTGTGGAACATATTGGCCCTGGAAGGGTTCCAAAGGCCATAGAAGGAGAGCAAGTTGCGGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCGAATACTTTTGAGAGGTTGCATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACGTAATAAAATTGGAGGGCTTGATAACGTCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGACCCCCACCACAATGTTCCGTTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCAATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGACGACTATTGGCTTAAATTGCGGTTGTCACATTCAACAGTATTCAGGCCGCCACACCATTATAGGCGATGTGTTGCAGATACATTTAAGGACTACCCATCTACTACGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGAAGAGTGAGTTCTTTACGTCAGAGCCTCTGCCTTGTGATCCTTCAAGTTTACCAAAATATGCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAGGTTGCCGCAGGAGTTAGACAAGAAAAAGGAAATAAGGCAAATGTCACAGCAAAAGACAATGCTGACCCAGGCTTATCTGTGCAGCAAGGACGTTATTCCAGCTCAAGGAACCAAAGTGAATTATCCAACCCTCATAGAGGACCCGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAGATGTTAAAGAAATGGATAATAATTTCTCTGGGCATCTTTATAAGAGGCCTTCACATTCAGGTCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAGGAAGTTGATGATGTGCCTCCTGTTTCAAACAAAGGGAACCTATCCAAACTATCTGGGCTGGTGGCATCTAAGACTTTGTCTGAAGATCAGGAGGTTAAACCAGTTCACTTGCACCACAGAAAACCAATCGAAGTAAGAAAATCCGTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCCCAGCTGAAAAATCAACTCCGGGCGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGATAAGTCAAGAGCAAGAGGTGAGAAAGTTCGTGCACAGCGGAAGTAG	2094	0.4417	MGCLCSKSSAVEDSKEGVTKKYQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIDGGHVKGSLVDKKANGSGQLYGDHDVKKKLEKPELTVVEHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNVIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPHHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRRCVADTFKDYPSTTVKLIETLLSVEPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYAPSKEIDAKLRDEARRQGAVGGREQKVAAGVRQEKGNKANVTAKDNADPGLSVQQGRYSSSRNQSELSNPHRGPVSGILVFPHKQSEDVKEMDNNFSGHLYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNKGNLSKLSGLVASKTLSEDQEVKPVHLHHRKPIEVRKSVESTNGSESRRRQDQKRIVDLNQIESRRVPAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01069	697	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Pumo11g01069	697	ProSiteProfiles	Protein kinase domain profile.	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01069	697	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Pumo11g01069	697	PANTHER	CELL DIVISION PROTEIN KINASE	133	425	-	-
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	594	630	-	-
	Pumo11g01069	697	SUPERFAMILY	Protein kinase-like (PK-like)	128	427	IPR011009	-
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	448	509	-	-
	Pumo11g01069	697	CDD	STKc_CDK9_like	135	419	-	-
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	673	690	-	-
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	594	648	-	-
	Pumo11g01069	697	FunFam	probable serine/threonine-protein kinase At1g54610	218	459	-	-
	Pumo11g01069	697	SMART	serkin_6	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01069	697	Pfam	Protein kinase domain	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	673	697	-	-
	Pumo11g01069	697	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Pumo11g01069	697	MobiDBLite	consensus disorder prediction	481	505	-	-
	Pumo11g01069	697	Gene3D	Phosphorylase Kinase; domain 1	122	217	-	-
	Pumo11g01069	697	Gene3D	Transferase(Phosphotransferase) domain 1	218	457	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01069	Pumo-Chr11	38774968	38782198	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01069	127	461	Core Cell Cycle Gene Families	AT5G10270	47.863	8.94e-110	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo11g01069		Pkinase	2.8e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01069	-		-	gmx:100807590	1335.86