LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01068	ATGTCTACCCTTCTCATCTCTTTGCTTCTTCTCATCACAAATCTTACCCTTCTTCTAACCTCAGTTTCATCCACAGAGTTCATCTACAACACCAACTTCAACTCCACCAACACCCTTCTACATGGCAACGCCACCATAGAATCTTCCATTCTCACCCTCACCAACCGTACCACCTTTTCTGTGGGCCGTGCTTTCTATCCTTTCAAGATCCCCACAAAATCTTCTAACTCTTCAACCCCTTTACCATTCTCAACCTCTTTCATTTTCTCCATTGCCCCATTCAAAGACCTTCTCCCTGGCCATGGCTTTGTCTTCATATTAACACCTTCTGCAGGCACCACTGGGGTGAATTCTGCTCAGCATCTTGGCCTCTTAAACTTCACCAACAACGGTGATCCCAACAACCATGTCTTTGGCGTTGAGTTTGATGTGTTTGACAACCAAGAGTTCATTGACATCAATGACAATCATGTGGGGGTGGACATAAACTCTCTTTCTTCTTTTGCTTCCCATGATGCTGGATTTTGGGGTGGGGAGGATGCTGACGAGTTTAAGGATTTGAAGCTTAATGATGGTGAGAACTATCAAGTGTGGATTGAGTATTTAGATTCTAGAGTTAATGTCACAATGGCTCCTGCAGGCCAGAAAAGGCCTCAGAAACCCTTGATTAGTGAAATTGTGGATCTTTCTGAAGTTCTTTTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGCAGCTTGTGGAGAGTCACAAGATTTTGGCTTGGAGCTTTAGTAACTCAAATTTTTCTATTGGTGATGCTTTAGATACTACAAATTTGCCTTCATTTGTGCTTTCCAAAGAGTCTATTTTGAGGTCAACAGGTTTTATTGTAGGGATCATTACAGGTGTTTTGTTTGTCATTGGTAGTGCTGTTGTGATATTTGTGCTTTTTCTCAGAAGAAAAAGGAGTAAAAGAAAGGATGTAGAAGAAGACATTGAAGATTGGGAACTAGAGTATTGGCCACATCGTGTAAGATATGAAGATATTTATGATGCTACTAAAGGATTTTCAGACCAAAATGTAATTGGGTTTGGAGGGAATGGGAAAGTCTATAAAGGGCTTCTGCAAGGAGTGCAAGTTGCAGTGAAAAGAATTCCTTGTGACAGTGAACATGGATTGAGAGATTTTCTGTCTGAGATTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTTCCATTGAGAGGTTGGTGTAAGAAAGAGAGGAGCTTGATTTTAATCTATGACTATATGGATAATGGGAGTTTAGATAAAAGAATATTTGATGGTGATGAGAACACAATTTTTGGGTGGGAGGAGAGAATCAAGGTGCTGAAGGATGTGGCACATGGAATATTGTATTTGCATGAGGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTACTTGATAAGGATATGAACGCAAGATTGGGGGATTTTGGACTAGCCAGAATGCATCATCATGAGCAGATTGCTCATACCTCACAAGTGATTGGAACTGTTGGTTTCATGGCACCTGAACTTATTCACACTGGGAGAGCCTCAACACAGACTGATGTGTTCAGTTTTGGTGTGTTGATTTTAGAGGTGATGTGTGGGAGAAGACCAAATGAAGAAAACAAGCCAGCCTTGGTTACTTGGTTATGGAGGCTAAAGGAGAGAGGGGAAGAGTGTTCTGCTCTTGATGAAAGATTAAAAGGGAGGGGTGAATGTAATATTGATGAGGTTAGGAGGGTGCTTCATCTTGGTTTGTTGTGCACTCATCCTGACCCTCGTGTTAGGCCAAGTATGAGACAGGTTGTGAAGGTGCTGGAGGGAGAGAGTTTAGATACGAGCTTGCTTGACAAAATAAATTCAGCAGCTGGATATGTTGGGAGCTTTGGTAACAGCTTTCACCCCACAATTGAGGATATTTACTCCTCCCACTGCTCTTTCACAACTCTGTGTGACAGTGAGGGCAGATGA	2010	0.4209	MSTLLISLLLLITNLTLLLTSVSSTEFIYNTNFNSTNTLLHGNATIESSILTLTNRTTFSVGRAFYPFKIPTKSSNSSTPLPFSTSFIFSIAPFKDLLPGHGFVFILTPSAGTTGVNSAQHLGLLNFTNNGDPNNHVFGVEFDVFDNQEFIDINDNHVGVDINSLSSFASHDAGFWGGEDADEFKDLKLNDGENYQVWIEYLDSRVNVTMAPAGQKRPQKPLISEIVDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNSNFSIGDALDTTNLPSFVLSKESILRSTGFIVGIITGVLFVIGSAVVIFVLFLRRKRSKRKDVEEDIEDWELEYWPHRVRYEDIYDATKGFSDQNVIGFGGNGKVYKGLLQGVQVAVKRIPCDSEHGLRDFLSEISSLGRLKHRNVVPLRGWCKKERSLILIYDYMDNGSLDKRIFDGDENTIFGWEERIKVLKDVAHGILYLHEGWEVKVLHRDIKSSNVLLDKDMNARLGDFGLARMHHHEQIAHTSQVIGTVGFMAPELIHTGRASTQTDVFSFGVLILEVMCGRRPNEENKPALVTWLWRLKERGEECSALDERLKGRGECNIDEVRRVLHLGLLCTHPDPRVRPSMRQVVKVLEGESLDTSLLDKINSAAGYVGSFGNSFHPTIEDIYSSHCSFTTLCDSEGR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01068	669	Coils	Coil	314	334	-	-
	Pumo11g01068	669	ProSitePatterns	Protein kinases ATP-binding region signature.	358	379	IPR017441	GO:0005524
	Pumo11g01068	669	CDD	STKc_IRAK	358	621	-	-
	Pumo11g01068	669	SMART	serkin_6	352	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01068	669	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	264	IPR013320	-
	Pumo11g01068	669	Gene3D	-	22	263	-	-
	Pumo11g01068	669	SUPERFAMILY	Protein kinase-like (PK-like)	328	620	IPR011009	-
	Pumo11g01068	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Pumo11g01068	669	Gene3D	Transferase(Phosphotransferase) domain 1	427	633	-	-
	Pumo11g01068	669	Pfam	Legume lectin domain	25	263	IPR001220	GO:0030246
	Pumo11g01068	669	Pfam	Protein kinase domain	353	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01068	669	ProSiteProfiles	Protein kinase domain profile.	352	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo11g01068	669	PANTHER	-	41	623	-	-
	Pumo11g01068	669	CDD	lectin_legume_LecRK_Arcelin_ConA	25	262	IPR001220	GO:0030246
	Pumo11g01068	669	Gene3D	Phosphorylase Kinase; domain 1	314	426	-	-
	Pumo11g01068	669	FunFam	L-type lectin-domain containing receptor kinase S.4	427	631	-	-
	Pumo11g01068	669	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	312	426	-	-
	Pumo11g01068	669	FunFam	L-type lectin-domain containing receptor kinase S.4	23	267	-	-
	Pumo11g01068	669	CDD	TM_EGFR-like	288	322	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01068	Pumo-Chr11	38770845	38773175	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01068	22	570	Receptor kinase-like Gene Family	AT4G04960	61.011	0.0	656

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo11g01068		Pkinase	3.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01068	-		-	gmx:100807059	1222.61