Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01039 ATGACTCAGTGCAGTGACTCTGAAAAGGATCATCATAACATCATAGTGGAGGGACGAAAGGATAGCTTAATTAGAACTTGCCCTACGTGTGGCCATCATATCAAATGCCAAGAACAGGGTGGTGGAATTCATGACTTACCTGGACTTCCTGCTGGAGTGAAGTTTGATCCCACAGATCAAGAGATTCTTGAACATTTAGAAGCGAAGGTTCGCTCTGATATTCATAAGCTTCATCCCCTAATTGATGAGTTCATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATTCGCCATTTCTTTCACCGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAAGATGGAAGTGAGACACGTTGGCACAAAACAGGTAAAACCAGGCCAGTCTACTACAGTGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTGCTCTACACAAACTATGGGAAGCAAAGAAAGCCAGAGAAAACCAACTGGGTCATGCACCAATACCACCTTGGAAGTGATGAAGAGGAGAAGGAAGGGGAGTTAGTGGTCTCCAAAGTTTTCTACCAAACACAGCCTAGACAATGTGGCTCCCTCATGAAAGACTCATCAGTTCCTGGGAAGTTACATATGAAGGGTCAAAGTGTGCATGAGGTAATGAATAGTAACAAAAACAATAATAATAATGGGTTTGTTGAGTACTACCATTCAAATTTCATATCATTTGATCAAGGAGGGCAACATAGACCTAGCACTGCTCAAGTAATTTCCCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGA 864 0.4317 MTQCSDSEKDHHNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYYSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSSVPGKLHMKGQSVHEVMNSNKNNNNNGFVEYYHSNFISFDQGGQHRPSTAQVISHFPVHEGAPFIP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01039 287 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Pumo11g01039 287 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 22 230 IPR044799 GO:0003700
Pumo11g01039 287 MobiDBLite consensus disorder prediction 128 144 - -
Pumo11g01039 287 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Pumo11g01039 287 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Pumo11g01039 287 MobiDBLite consensus disorder prediction 123 144 - -
Pumo11g01039 287 FunFam NAC domain-containing protein 73 58 212 - -
Pumo11g01039 287 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01039 Pumo-Chr11 38324816 38328080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01039 25 287 NAC Transcription Factor Family AT4G28500 64.286 7.40e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g01039 NAM 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01039 - - gmx:100797459 567.77