Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01037 ATGCTAAGAAAGATGGATGAAGGAGAAATCATCACAAGTACTTTCCCTCAGAACCTAACTGCTTCTGCTGCATCCAATAATAACAATCCTCCTCCTGCTTTGAAGAGGAAAAGAAACCTCCCAGGAAACCCAGATCCTGAAGCAGAAGTCATAGCCTTATCACCAAAGACCCTGATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGACACAACCTTCCATGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGATCCTTCAAGGGCCCTTGGAGACTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGAAGAGACAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAGACATGAACACCTCCTTAGGGGGTAACATTGGTTACAACATAATGGGAGGAACATCCCTAGGCCCTAACATGGGAACCCATTTCCCCTCAATTTTCAAGCCAGTTTCAAGCACTGAAGAAACAAGTAACCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTTCTCAGGCTCAAGAAACAATAATGGTAGTCAACCCCAATTTGCGTGAGATTCATCATCAACTTGGTTCTGCCACAAGCTCATCAGCAACAATGTATAGTGGCAACTCACTAGTCCAATGCTCAAATCTTCCACCTTCTAATAATAACTATCAGCCAAGTTGGGTGTTTGGAACTAAGCTTTCCAATAGTAACAACAACAACCAAGAGATAATAACAACAACTAGCACTACTTCATCACTTCCCTTAGGCAACACAAATAGTGTTGTTCCTTCTTTGTATAGTTTCCAACACCAACCCCACCAAACATGTTCTTCATCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTGGTAACAGCCAAGGTCAAGATGGGAATAATAACAAGTATAGTGGCATGTACGGTTCAAGTTTGGTGCTCACCACCACTCTTGGGAGTGATCAAGCAGATAACTCTGCATGTGAATTGTCACAAATGCACCCTCACAAACGGAGACACGTGCTCAATGAAGAAAGTGGAGGGGGGCAAACTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCACACTTCATCAATCAAGGGGTGGATTTGATTTGA 1446 0.4454 MLRKMDEGEIITSTFPQNLTASAASNNNNPPPALKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDMNTSLGGNIGYNIMGGTSLGPNMGTHFPSIFKPVSSTEETSNQTSRGLPLWMGQTSSQAQETIMVVNPNLREIHHQLGSATSSSATMYSGNSLVQCSNLPPSNNNYQPSWVFGTKLSNSNNNNQEIITTTSTTSSLPLGNTNSVVPSLYSFQHQPHQTCSSSSANMSATALLQKAAQIGATSSDPSWLGSLGLKCGNSQGQDGNNNKYSGMYGSSLVLTTTLGSDQADNSACELSQMHPHKRRHVLNEESGGGQTRDFLGVGVQNHLPHFINQGVDLI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01037 481 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Pumo11g01037 481 MobiDBLite consensus disorder prediction 17 47 - -
Pumo11g01037 481 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Pumo11g01037 481 MobiDBLite consensus disorder prediction 17 33 - -
Pumo11g01037 481 Gene3D Classic Zinc Finger 97 188 - -
Pumo11g01037 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 466 IPR031140 -
Pumo11g01037 481 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Pumo11g01037 481 FunFam protein indeterminate-domain 12-like 43 111 - -
Pumo11g01037 481 Gene3D Classic Zinc Finger 60 87 - -
Pumo11g01037 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01037 Pumo-Chr11 38307202 38310295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01037 31 467 IDZ Gene Family AT1G03840 50.101 2.22e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01037 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01037 K25870 - gmx:100790620 808.905